Gm48535 Gene Detail

Summary

• Symbol
  Gm48535
• Name
  predicted gene, 48535

• Feature Type
  lncRNA gene
• IDs
  MGI:6098077
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:46705386-46712492 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  237 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098077	lncRNA gene	Chr12:46705386-46712492 (-)
129S1/SvImJ	ENSMUSG00200012302	lncRNA gene	Chr12:38635293-38642395 (-)
A/J	ENSMUSG00195017799	lncRNA gene	Chr12:41220827-41227931 (-)
AKR/J	ENSMUSG00220005294	lncRNA gene	Chr12:39233417-39240521 (-)
BALB/cJ	ENSMUSG00180003689	lncRNA gene	Chr12:40207816-40214920 (-)
C3H/HeJ	ENSMUSG00175011901	lncRNA gene	Chr12:43275276-43282380 (-)
C57BL/6NJ	ENSMUSG00215013286	lncRNA gene	Chr12:39646657-39653763 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003675	lncRNA gene	Chr12:39905882-39913066 (-)
CBA/J	ENSMUSG00210016282	lncRNA gene	Chr12:39749820-39756924 (-)
DBA/2J	ENSMUSG00185014760	lncRNA gene	Chr12:41745220-41752322 (-)
FVB/NJ	ENSMUSG00205001464	lncRNA gene	Chr12:39600819-39607921 (-)
JF1/MsJ	ENSUMUG00000003209	lncRNA gene	Chr12:45915294-45922372 (-)
LP/J	ENSMUSG00230010280	lncRNA gene	Chr12:48776165-48783267 (-)
NOD/ShiLtJ	ENSMUSG00190003632	lncRNA gene	Chr12:38756253-38763355 (-)
NZO/HlLtJ	ENSMUSG00225031362	lncRNA gene	Chr12:50916697-50923775 (-)
PWK/PhJ	ENSLUMG00010013093	lncRNA gene	Chr12:39997370-40004451 (-)
SPRET/EiJ	ENSMSPG00010016000	lncRNA gene	Chr12:41164315-41171419 (-)
WSB/EiJ	ENSIUOG00005001381	lncRNA gene	Chr12:39564107-39571214 (-)

Homology

• Gene Tree
  Gm48535
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112174 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112174	Ensembl Gene Model | MGI Sequence Detail	7107	C57BL/6J
transcript	ENSMUST00000217951	Ensembl | MGI Sequence Detail	2960	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;