Gm48508 Gene Detail

Summary

• Symbol
  Gm48508
• Name
  predicted gene, 48508

• Feature Type
  lncRNA gene
• IDs
  MGI:6098039
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:45140765-45334353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  7661 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098039	lncRNA gene	Chr12:45140765-45334353 (+)
129S1/SvImJ	ENSMUSG00200012104	lncRNA gene	Chr12:37051841-37119799 (+)
A/J	ENSMUSG00195019524	lncRNA gene	Chr12:39644303-39712021 (+)
AKR/J	ENSMUSG00220005170	lncRNA gene	Chr12:37661961-37729670 (+)
BALB/cJ	ENSMUSG00180003716	lncRNA gene	Chr12:38631348-38699064 (+)
C3H/HeJ	ENSMUSG00175012196	lncRNA gene	Chr12:41698904-41766610 (+)
C57BL/6NJ	ENSMUSG00215012714	lncRNA gene	Chr12:38081488-38149572 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003815	lncRNA gene	Chr12:38361639-38439452 (+)
CBA/J	ENSMUSG00210016319	lncRNA gene	Chr12:38173551-38241255 (+)
DBA/2J	ENSMUSG00185015396	lncRNA gene	Chr12:40161754-40229720 (+)
FVB/NJ	ENSMUSG00205001617	lncRNA gene	Chr12:38039505-38107476 (+)
JF1/MsJ	ENSUMUG00000003794	lncRNA gene	Chr12:44348663-44421511 (+)
LP/J	ENSMUSG00230010816	lncRNA gene	Chr12:47192851-47260785 (+)
NOD/ShiLtJ	ENSMUSG00190003736	lncRNA gene	Chr12:37164536-37232507 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012938	lncRNA gene	Chr12:38446879-38519775 (+)
SPRET/EiJ	ENSMSPG00010001973	lncRNA gene	Chr12:39562791-39637882 (+)
WSB/EiJ	ENSIUOG00005001530	lncRNA gene	Chr12:37988311-38057313 (+)

Homology

• Gene Tree
  Gm48508
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000112112 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112112	Ensembl Gene Model | MGI Sequence Detail	193589	C57BL/6J
transcript	ENSMUST00000219735	Ensembl | MGI Sequence Detail	2657	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48508:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113380	Chr12:45140784-45140802 (+)	28 bp