Gm48499 Pseudogene Detail

Summary

• Symbol
  Gm48499
• Name
  predicted gene, 48499

• Feature Type
  pseudogene
• IDs
  MGI:6098025
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:17118431-17120154 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  38

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098025	pseudogene	Chr13:17118431-17120154 (+)
129S1/SvImJ	ENSMUSG00200014917	pseudogene	Chr13:14349399-14351122 (+)
A/J	ENSMUSG00195042124	pseudogene	Chr13:13430005-13431728 (+)
AKR/J	ENSMUSG00220040672	pseudogene	Chr7:70558884-70560607 (+)
BALB/cJ	ENSMUSG00180037183	pseudogene	Chr13:13784659-13786382 (+)
C3H/HeJ	ENSMUSG00175037145	pseudogene	Chr13:13886423-13888146 (+)
C57BL/6NJ	ENSMUSG00215029544	pseudogene	Chr13:13874442-13876165 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053797	pseudogene	Chr11:69782613-69784336 (-)
CAST/EiJ	ENSTCUG00005009609	pseudogene	Chr12:41355806-41357528 (+)
CAST/EiJ	ENSTCUG00005025882	pseudogene	Chr14:27454581-27456304 (+)
CAST/EiJ	ENSTCUG00005002694	pseudogene	Chr15:18434488-18436211 (+)
CAST/EiJ	ENSTCUG00005053001	pseudogene	Chr2:85044064-85045787 (-)
CAST/EiJ	ENSTCUG00005044589	pseudogene	Chr2:142477845-142479568 (-)
CAST/EiJ	ENSTCUG00005000388	pseudogene	Chr3:3954005-3955728 (+)
CAST/EiJ	ENSTCUG00005027679	pseudogene	ChrX:18067718-18069441 (+)
CAST/EiJ	ENSTCUG00005021688	pseudogene	ChrX:97243057-97244780 (+)
CAST/EiJ	ENSTCUG00005008215	pseudogene	ChrX:102855112-102856835 (+)
CBA/J	ENSMUSG00210032087	pseudogene	Chr13:13746424-13748147 (+)
DBA/2J	ENSMUSG00185014321	pseudogene	Chr13:14441290-14443013 (+)
FVB/NJ	ENSMUSG00205052306	pseudogene	Chr13:13622018-13623741 (+)
JF1/MsJ	ENSUMUG00000055785	pseudogene	Chr7:8660600-8662318 (-)
JF1/MsJ	ENSUMUG00000055765	pseudogene	Chr7:8604218-8605941 (-)
JF1/MsJ	ENSUMUG00000050753	pseudogene	Chr7:7387391-7389114 (-)
LP/J	ENSMUSG00230037182	pseudogene	Chr13:23850208-23851931 (+)
NOD/ShiLtJ	ENSMUSG00190026293	pseudogene	Chr13:13746424-13748147 (+)
NZO/HlLtJ	ENSMUSG00225032667	pseudogene	Chr13:17637508-17639231 (+)
PWK/PhJ	ENSLUMG00010025689	pseudogene	Chr13:57907265-57908988 (+)
PWK/PhJ	ENSLUMG00010052499	pseudogene	Chr14:44440196-44441919 (-)
PWK/PhJ	ENSLUMG00010052531	pseudogene	Chr14:49128965-49130683 (+)
PWK/PhJ	ENSLUMG00010047620	pseudogene	Chr17:34448701-34450424 (+)
PWK/PhJ	ENSLUMG00010037407	pseudogene	Chr6:140487517-140489240 (+)
PWK/PhJ	ENSLUMG00010017357	pseudogene	Chr1:179127256-179128979 (+)
PWK/PhJ	ENSLUMG00010006848	pseudogene	Chr1:94228935-94230658 (+)
PWK/PhJ	ENSLUMG00010037270	pseudogene	Chr1:170561647-170563372 (-)
PWK/PhJ	ENSLUMG00010037311	pseudogene	Chr1:173019731-173021454 (-)
PWK/PhJ	ENSLUMG00010001674	pseudogene	ChrX:143524112-143525835 (+)
SPRET/EiJ	ENSMSPG00010019589	pseudogene	Chr13:12870620-12872117 (+)
WSB/EiJ	ENSIUOG00005035680	pseudogene	Chr13:13073770-13075294 (+)

Homology

• Gene Tree
  Gm48499
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40

• Ensembl
  ENSMUSG00000114114 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114114	Ensembl Gene Model | MGI Sequence Detail	1724	C57BL/6J
transcript	ENSMUST00000222334	Ensembl | MGI Sequence Detail	1724	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;