Gm48494 Pseudogene Detail

Summary

• Symbol
  Gm48494
• Name
  predicted gene, 48494

• Feature Type
  pseudogene
• IDs
  MGI:6098019
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:16565176-16565439 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6098019	pseudogene	Chr13:16565176-16565439 (+)
129S1/SvImJ	ENSMUSG00200014524	pseudogene	Chr13:13774193-13774456 (+)
A/J	ENSMUSG00195042711	pseudogene	Chr13:12863130-12863393 (+)
AKR/J	ENSMUSG00220036761	pseudogene	Chr13:12885833-12886136 (+)
BALB/cJ	ENSMUSG00180040328	pseudogene	Chr13:13217797-13218060 (+)
C3H/HeJ	ENSMUSG00175037977	pseudogene	Chr13:13314109-13314372 (+)
C57BL/6NJ	ENSMUSG00215036742	pseudogene	Chr13:13321173-13321436 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015328	pseudogene	Chr13:13436518-13436695 (+)
CBA/J	ENSMUSG00210032774	pseudogene	Chr13:13179650-13179913 (+)
DBA/2J	ENSMUSG00185014963	pseudogene	Chr13:13874482-13874745 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000025484	pseudogene	Chr13:13714495-13714798 (+)
LP/J	ENSMUSG00230036777	pseudogene	Chr13:23283400-23283663 (+)
NOD/ShiLtJ	ENSMUSG00190023730	pseudogene	Chr13:13179601-13179864 (+)
NZO/HlLtJ	ENSMUSG00225032603	pseudogene	Chr13:17084237-17084500 (+)
PWK/PhJ	ENSLUMG00010034335	pseudogene	Chr13:12684495-12684798 (+)
SPRET/EiJ	ENSMSPG00010022263	pseudogene	Chr13:12299704-12299882 (+)
WSB/EiJ	ENSIUOG00005036942	pseudogene	Chr13:12524170-12524433 (+)

Homology

• Gene Tree
  Gm48494
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113232 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113232	Ensembl Gene Model | MGI Sequence Detail	264	C57BL/6J
transcript	ENSMUST00000221232	Ensembl | MGI Sequence Detail	264	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;