Gm48479 Gene Detail

Summary

• Symbol
  Gm48479
• Name
  predicted gene, 48479

• Feature Type
  lncRNA gene
• IDs
  MGI:6097995
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:14063085-14108373 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1499 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097995	lncRNA gene	Chr12:14063085-14108373 (+)
129S1/SvImJ	ENSMUSG00200024211	lncRNA gene	Chr12:11066130-11110913 (+)
A/J	ENSMUSG00195019222	lncRNA gene	Chr12:11097868-11145391 (+)
AKR/J	ENSMUSG00220030594	lncRNA gene	Chr12:11181464-11226252 (+)
BALB/cJ	ENSMUSG00180009481	lncRNA gene	Chr12:11083757-11131270 (+)
C3H/HeJ	ENSMUSG00175005778	lncRNA gene	Chr12:11146143-11190923 (+)
C57BL/6NJ	ENSMUSG00215007367	lncRNA gene	Chr12:10910081-10954866 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006132	lncRNA gene	Chr12:10628110-10678178 (+)
CBA/J	ENSMUSG00210008046	lncRNA gene	Chr12:11160372-11205154 (+)
DBA/2J	ENSMUSG00185003802	lncRNA gene	Chr12:11078107-11122901 (+)
FVB/NJ	ENSMUSG00205001687	lncRNA gene	Chr12:10883583-10928360 (+)
JF1/MsJ	ENSUMUG00000010936	lncRNA gene	Chr12:10988544-11032333 (+)
LP/J	ENSMUSG00230022727	lncRNA gene	Chr12:12884147-12928931 (+)
NOD/ShiLtJ	ENSMUSG00190013261	lncRNA gene	Chr12:12337576-12382354 (+)
NZO/HlLtJ	ENSMUSG00225030096	lncRNA gene	Chr12:14977406-15022180 (+)
PWK/PhJ	ENSLUMG00010004433	lncRNA gene	Chr12:10744569-10788371 (+)
SPRET/EiJ	ENSMSPG00010003191	lncRNA gene	Chr12:11608288-11652013 (+)
WSB/EiJ	ENSIUOG00005001677	lncRNA gene	Chr12:11122269-11167045 (+)

Homology

• Gene Tree
  Gm48479
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000113522 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113522	Ensembl Gene Model | MGI Sequence Detail	45289	C57BL/6J
transcript	ENSMUST00000322337	Ensembl | MGI Sequence Detail	1059	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48479:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112835	Chr12:14068651-14068653 (+)	5,567 bp