Gm48472 Pseudogene Detail

Summary

• Symbol
  Gm48472
• Name
  predicted gene, 48472

• Feature Type
  pseudogene
• IDs
  MGI:6097987
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19023136-19023289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  37

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097987	pseudogene	Chr12:19023136-19023289 (+)
129S1/SvImJ	ENSMUSG00200023663	pseudogene	Chr12:15298280-15298430 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180009902	pseudogene	Chr12:17188540-17188693 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006458	pseudogene	Chr12:15616621-15616772 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185003855	pseudogene	Chr12:17706740-17706893 (-)
DBA/2J	ENSMUSG00185004487	pseudogene	Chr12:18660643-18660793 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000007835	pseudogene	Chr12:20296679-20296832 (-)
JF1/MsJ	ENSUMUG00000011906	pseudogene	Chr12:18083998-18084151 (+)
JF1/MsJ	ENSUMUG00000008200	pseudogene	Chr12:22769143-22769294 (-)
JF1/MsJ	ENSUMUG00000012017	pseudogene	Chr12:19460785-19460936 (-)
JF1/MsJ	ENSUMUG00000011849	pseudogene	Chr12:17167286-17167437 (+)
JF1/MsJ	ENSUMUG00000011611	pseudogene	Chr12:15923638-15923791 (+)
JF1/MsJ	ENSUMUG00000011811	pseudogene	Chr12:16642272-16642425 (+)
JF1/MsJ	ENSUMUG00000012124	pseudogene	Chr12:19751107-19751258 (-)
JF1/MsJ	ENSUMUG00000011956	pseudogene	Chr12:19089897-19090050 (-)
LP/J	ENSMUSG00230008051	pseudogene	Chr12:25027782-25027933 (-)
LP/J	ENSMUSG00230008028	pseudogene	Chr12:24673441-24673594 (-)
LP/J	ENSMUSG00230023241	pseudogene	Chr12:19801928-19802078 (-)
LP/J	ENSMUSG00230007822	pseudogene	Chr12:21234450-21234603 (-)
LP/J	ENSMUSG00230008130	pseudogene	Chr12:26210923-26211076 (-)
LP/J	ENSMUSG00230023195	pseudogene	Chr12:18551944-18552097 (+)
LP/J	ENSMUSG00230021602	pseudogene	Chr12:17830058-17830211 (+)
LP/J	ENSMUSG00230007724	pseudogene	Chr12:20043104-20043257 (-)
LP/J	ENSMUSG00230007737	pseudogene	Chr12:20123548-20123700 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225030152	pseudogene	Chr12:19934634-19934787 (+)
NZO/HlLtJ	ENSMUSG00225030399	pseudogene	Chr12:20656488-20656641 (+)
NZO/HlLtJ	ENSMUSG00225035180	pseudogene	Chr12:22325729-22325881 (-)
NZO/HlLtJ	ENSMUSG00225035240	pseudogene	Chr12:23436995-23437148 (-)
NZO/HlLtJ	ENSMUSG00225035383	pseudogene	Chr12:26856548-26856701 (-)
NZO/HlLtJ	ENSMUSG00225035395	pseudogene	Chr12:27210874-27211025 (-)
NZO/HlLtJ	ENSMUSG00225035457	pseudogene	Chr12:28394020-28394173 (-)
NZO/HlLtJ	ENSMUSG00225035136	pseudogene	Chr12:22003970-22004120 (-)
NZO/HlLtJ	ENSMUSG00225035175	pseudogene	Chr12:22245279-22245432 (-)
PWK/PhJ	ENSLUMG00010005260	pseudogene	Chr12:16720709-16720862 (-)
PWK/PhJ	ENSLUMG00010004392	pseudogene	Chr12:17300843-17300996 (-)
PWK/PhJ	ENSLUMG00010005238	pseudogene	Chr12:15350194-15350347 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001721	pseudogene	Chr12:16894277-16894428 (+)

Homology

• Gene Tree
  Gm48472
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000113809 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113809	Ensembl Gene Model | MGI Sequence Detail	154	C57BL/6J
transcript	ENSMUST00000222049	Ensembl | MGI Sequence Detail	154	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;