Gm48467 Pseudogene Detail

Summary

• Symbol
  Gm48467
• Name
  predicted gene, 48467

• Feature Type
  pseudogene
• IDs
  MGI:6097982
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:83015646-83016006 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097982	pseudogene	Chr11:83015646-83016006 (-)
129S1/SvImJ	ENSMUSG00200051642	pseudogene	Chr11:80135099-80135459 (-)
A/J	ENSMUSG00195046799	pseudogene	Chr11:79995751-79995937 (-)
AKR/J	ENSMUSG00220048669	pseudogene	Chr11:80211379-80211739 (-)
BALB/cJ	ENSMUSG00180044978	pseudogene	Chr11:80204283-80204643 (-)
C3H/HeJ	ENSMUSG00175043304	pseudogene	Chr11:80171542-80171902 (-)
C57BL/6NJ	ENSMUSG00215043166	pseudogene	Chr11:79799611-79799971 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046099	pseudogene	Chr11:79697541-79697722 (-)
CBA/J	ENSMUSG00210047169	pseudogene	Chr11:79989221-79989581 (-)
DBA/2J	ENSMUSG00185041419	pseudogene	Chr11:80301383-80301743 (-)
FVB/NJ	ENSMUSG00205048543	pseudogene	Chr11:80080394-80080754 (-)
JF1/MsJ	ENSUMUG00000053620	pseudogene	Chr11:80638100-80638281 (-)
LP/J	ENSMUSG00230029263	pseudogene	Chr11:81290504-81290864 (-)
NOD/ShiLtJ	ENSMUSG00190049100	pseudogene	Chr11:80315913-80316273 (-)
NZO/HlLtJ	ENSMUSG00225039523	pseudogene	Chr11:83477211-83477570 (-)
PWK/PhJ	ENSLUMG00010026128	pseudogene	Chr11:80153637-80153818 (-)
SPRET/EiJ	ENSMSPG00010043676	pseudogene	Chr11:80552525-80552735 (-)
WSB/EiJ	ENSIUOG00005036508	pseudogene	Chr11:80141827-80142008 (-)

Homology

• Gene Tree
  Gm48467
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111344 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111344	Ensembl Gene Model | MGI Sequence Detail	361	C57BL/6J
transcript	ENSMUST00000214874	Ensembl | MGI Sequence Detail	361	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48467:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109646	Chr11:83017450-83017458 (-)	-1,448 bp