Gm48462 Gene Detail

Summary

• Symbol
  Gm48462
• Name
  predicted gene, 48462

• Feature Type
  lncRNA gene
• IDs
  MGI:6097976
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:82985046-82988896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097976	lncRNA gene	Chr11:82985046-82988896 (+)
129S1/SvImJ	ENSMUSG00200052243	lncRNA gene	Chr11:80099651-80103501 (+)
A/J	ENSMUSG00195045942	lncRNA gene	Chr11:79965748-79969598 (+)
AKR/J	ENSMUSG00220048491	lncRNA gene	Chr11:80187757-80191609 (+)
BALB/cJ	ENSMUSG00180043613	lncRNA gene	Chr11:80173682-80177532 (+)
C3H/HeJ	ENSMUSG00175039973	lncRNA gene	Chr11:80136094-80139944 (+)
C57BL/6NJ	ENSMUSG00215042490	lncRNA gene	Chr11:79769011-79772861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046637	lncRNA gene	Chr11:79672883-79676516 (+)
CBA/J	ENSMUSG00210046730	lncRNA gene	Chr11:79953773-79957623 (+)
DBA/2J	ENSMUSG00185040048	lncRNA gene	Chr11:80270776-80274626 (+)
FVB/NJ	ENSMUSG00205048393	lncRNA gene	Chr11:80049794-80053644 (+)
JF1/MsJ	ENSUMUG00000053883	lncRNA gene	Chr11:80613456-80617088 (+)
LP/J	ENSMUSG00230029229	lncRNA gene	Chr11:81255055-81258905 (+)
NOD/ShiLtJ	ENSMUSG00190048940	lncRNA gene	Chr11:80285313-80289163 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010026311	lncRNA gene	Chr11:80128796-80132646 (+)
SPRET/EiJ	ENSMSPG00010045380	lncRNA gene	Chr11:80534140-80537992 (+)
WSB/EiJ	ENSIUOG00005036726	lncRNA gene	Chr11:80116978-80120828 (+)

Homology

• Gene Tree
  Gm48462
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000111016 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111016	Ensembl Gene Model | MGI Sequence Detail	3851	C57BL/6J
transcript	ENSMUST00000213219	Ensembl | MGI Sequence Detail	358	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;