Gm48446 Pseudogene Detail

Summary

• Symbol
  Gm48446
• Name
  predicted gene, 48446

• Feature Type
  pseudogene
• IDs
  MGI:6097957
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:18780270-18780309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097957	pseudogene	Chr12:18780270-18780309 (-)
129S1/SvImJ	ENSMUSG00200024102	pseudogene	Chr12:16135395-16135434 (+)
A/J	ENSMUSG00195021673	pseudogene	Chr12:15117157-15117196 (-)
A/J	ENSMUSG00195021683	pseudogene	Chr12:15745072-15745111 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010468	pseudogene	Chr12:17798683-17798722 (+)
BALB/cJ	ENSMUSG00180010474	pseudogene	Chr12:15129043-15129082 (-)
BALB/cJ	ENSMUSG00180010435	pseudogene	Chr12:15757052-15757091 (-)
C3H/HeJ	ENSMUSG00175021949	pseudogene	Chr12:20860845-20860884 (+)
C57BL/6NJ	ENSMUSG00215005667	pseudogene	Chr12:17016643-17016682 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006195	pseudogene	Chr12:17578066-17578105 (+)
CBA/J	ENSMUSG00210008627	pseudogene	Chr12:15143463-15143502 (-)
DBA/2J	ENSMUSG00185004368	pseudogene	Chr12:19239366-19239405 (+)
DBA/2J	ENSMUSG00185004370	pseudogene	Chr12:19377344-19377383 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000008401	pseudogene	Chr12:15680711-15680750 (-)
LP/J	ENSMUSG00230021728	pseudogene	Chr12:17587145-17587184 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225030200	pseudogene	Chr12:19691727-19691766 (-)
PWK/PhJ	ENSLUMG00010004403	pseudogene	Chr12:15476112-15476151 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48446
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000113377 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113377	Ensembl Gene Model | MGI Sequence Detail	40	C57BL/6J
transcript	ENSMUST00000222723	Ensembl | MGI Sequence Detail	40	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;