Gm48416 Pseudogene Detail

Summary

• Symbol
  Gm48416
• Name
  predicted gene, 48416

• Feature Type
  pseudogene
• IDs
  MGI:6097909
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:63402570-63404690 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  89

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097909	pseudogene	Chr12:63402570-63404690 (+)
129S1/SvImJ	ENSMUSG00200038435	pseudogene	ChrX:88913004-88915123 (+)
129S1/SvImJ	ENSMUSG00200046014	pseudogene	Chr6:123536070-123538190 (-)
129S1/SvImJ	ENSMUSG00200017502	pseudogene	Chr10:69228476-69230596 (+)
129S1/SvImJ	ENSMUSG00200016736	pseudogene	Chr17:54295519-54297639 (+)
129S1/SvImJ	ENSMUSG00200000364	pseudogene	Chr1:108796454-108798573 (-)
129S1/SvImJ	ENSMUSG00200010930	pseudogene	Chr4:84803461-84805581 (-)
A/J	ENSMUSG00195006237	pseudogene	Chr8:37493044-37495164 (+)
A/J	ENSMUSG00195006104	pseudogene	Chr10:69541817-69543937 (+)
A/J	ENSMUSG00195046934	pseudogene	Chr5:139622099-139624219 (+)
A/J	ENSMUSG00195042801	pseudogene	ChrX:92632853-92634973 (+)
A/J	ENSMUSG00195036864	pseudogene	Chr19:21876047-21878167 (+)
A/J	ENSMUSG00195000539	pseudogene	Chr1:91870029-91872149 (-)
AKR/J	ENSMUSG00220015723	pseudogene	Chr12:55983905-55986025 (+)
BALB/cJ	ENSMUSG00180007761	pseudogene	Chr18:42632762-42634882 (-)
BALB/cJ	ENSMUSG00180010179	pseudogene	Chr12:12292762-12294882 (+)
BALB/cJ	ENSMUSG00180007716	pseudogene	Chr10:69556399-69558519 (+)
BALB/cJ	ENSMUSG00180041971	pseudogene	ChrX:89298875-89300995 (+)
C3H/HeJ	ENSMUSG00175013053	pseudogene	Chr10:69407429-69409549 (+)
C3H/HeJ	ENSMUSG00175045894	pseudogene	ChrX:92874669-92876789 (+)
C3H/HeJ	ENSMUSG00175049525	pseudogene	Chr5:141942408-141944528 (+)
C3H/HeJ	ENSMUSG00175040828	pseudogene	Chr2:64078822-64080941 (+)
C3H/HeJ	ENSMUSG00175011125	pseudogene	Chr18:42151457-42153577 (-)
C3H/HeJ	ENSMUSG00175005645	pseudogene	Chr1:92077991-92080111 (-)
C57BL/6NJ	ENSMUSG00215009362	pseudogene	Chr12:56309175-56311295 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020085	pseudogene	Chr8:16863349-16865464 (-)
CAST/EiJ	ENSTCUG00005007982	pseudogene	ChrX:105834135-105836255 (-)
CAST/EiJ	ENSTCUG00005008230	pseudogene	ChrX:103782929-103785049 (+)
CAST/EiJ	ENSTCUG00005008247	pseudogene	ChrX:108184608-108186728 (-)
CBA/J	ENSMUSG00210008574	pseudogene	Chr12:12343259-12345379 (+)
CBA/J	ENSMUSG00210000069	pseudogene	Chr1:91928019-91930139 (-)
CBA/J	ENSMUSG00210000227	pseudogene	Chr1:91915038-91917158 (-)
CBA/J	ENSMUSG00210043174	pseudogene	ChrX:89773531-89775651 (+)
CBA/J	ENSMUSG00210040775	pseudogene	Chr2:64121815-64123934 (+)
CBA/J	ENSMUSG00210022495	pseudogene	Chr18:42198434-42200554 (-)
DBA/2J	ENSMUSG00185042568	pseudogene	Chr5:143745129-143747249 (+)
DBA/2J	ENSMUSG00185030217	pseudogene	ChrX:102254755-102256874 (+)
DBA/2J	ENSMUSG00185004337	pseudogene	Chr12:12910449-12912569 (-)
DBA/2J	ENSMUSG00185029058	pseudogene	Chr18:42107152-42109272 (-)
DBA/2J	ENSMUSG00185018916	pseudogene	Chr13:74893954-74896074 (-)
DBA/2J	ENSMUSG00185004342	pseudogene	Chr12:13095237-13097357 (-)
FVB/NJ	ENSMUSG00205012018	pseudogene	ChrX:104191667-104193787 (-)
FVB/NJ	ENSMUSG00205033135	pseudogene	ChrX:88856979-88859099 (+)
FVB/NJ	ENSMUSG00205039927	pseudogene	Chr11:43486063-43488183 (-)
FVB/NJ	ENSMUSG00205001929	pseudogene	Chr12:13043106-13045226 (-)
JF1/MsJ	ENSUMUG00000014720	pseudogene	Chr9:28844059-28846179 (+)
JF1/MsJ	ENSUMUG00000054769	pseudogene	Chr9:103913808-103915928 (-)
JF1/MsJ	ENSUMUG00000040046	pseudogene	Chr8:80303523-80305643 (+)
JF1/MsJ	ENSUMUG00000017878	pseudogene	Chr15:69503278-69505398 (-)
JF1/MsJ	ENSUMUG00000050584	pseudogene	Chr3:83144148-83146268 (-)
JF1/MsJ	ENSUMUG00000007999	pseudogene	Chr8:30729100-30731220 (+)
JF1/MsJ	ENSUMUG00000017565	pseudogene	Chr13:117522386-117524506 (+)
JF1/MsJ	ENSUMUG00000003026	pseudogene	Chr3:52803436-52805556 (-)
JF1/MsJ	ENSUMUG00000014702	pseudogene	Chr9:22504219-22506339 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190029565	pseudogene	Chr18:41866027-41868147 (-)
NOD/ShiLtJ	ENSMUSG00190030485	pseudogene	Chr18:46474162-46476282 (+)
NOD/ShiLtJ	ENSMUSG00190043551	pseudogene	ChrX:88978837-88980957 (+)
NOD/ShiLtJ	ENSMUSG00190033257	pseudogene	Chr8:76590122-76592242 (-)
NOD/ShiLtJ	ENSMUSG00190007116	pseudogene	Chr6:138376770-138378890 (+)
NOD/ShiLtJ	ENSMUSG00190047982	pseudogene	Chr2:113234830-113236950 (+)
NOD/ShiLtJ	ENSMUSG00190048063	pseudogene	Chr2:112313937-112316057 (+)
NOD/ShiLtJ	ENSMUSG00190016808	pseudogene	Chr2:110051102-110053205 (+)
NOD/ShiLtJ	ENSMUSG00190052547	pseudogene	Chr2:84890102-84892221 (-)
NOD/ShiLtJ	ENSMUSG00190003056	pseudogene	Chr1:137381169-137383289 (+)
NOD/ShiLtJ	ENSMUSG00190042712	pseudogene	Chr17:18409062-18411182 (+)
NOD/ShiLtJ	ENSMUSG00190045315	pseudogene	Chr11:44457160-44459280 (+)
NOD/ShiLtJ	ENSMUSG00190002253	pseudogene	Chr14:102372732-102374852 (-)
NOD/ShiLtJ	ENSMUSG00190025090	pseudogene	Chr16:39543229-39545349 (-)
NOD/ShiLtJ	ENSMUSG00190011708	pseudogene	Chr17:54519995-54522115 (+)
NOD/ShiLtJ	ENSMUSG00190027633	pseudogene	Chr10:7922129-7924249 (+)
NOD/ShiLtJ	ENSMUSG00190003551	pseudogene	Chr18:86000624-86002744 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043523	pseudogene	Chr17:34231533-34233616 (-)
PWK/PhJ	ENSLUMG00010041470	pseudogene	ChrX:32244104-32246224 (-)
PWK/PhJ	ENSLUMG00010007868	pseudogene	Chr4:28017934-28020054 (+)
PWK/PhJ	ENSLUMG00010002928	pseudogene	Chr9:81102419-81104540 (-)
PWK/PhJ	ENSLUMG00010008076	pseudogene	Chr4:59701108-59703228 (+)
SPRET/EiJ	ENSMSPG00010025271	pseudogene	Chr6:68183431-68185551 (-)
WSB/EiJ	ENSIUOG00005006110	pseudogene	Chr8:34329829-34331949 (-)
WSB/EiJ	ENSIUOG00005004449	pseudogene	Chr6:1261572-1263692 (+)
WSB/EiJ	ENSIUOG00005027910	pseudogene	Chr5:4878200-4880320 (-)
WSB/EiJ	ENSIUOG00005042206	pseudogene	ChrX:89483574-89485694 (+)
WSB/EiJ	ENSIUOG00005029493	pseudogene	Chr2:112975664-112977784 (+)
WSB/EiJ	ENSIUOG00005051964	pseudogene	Chr19:8596924-8599044 (-)
WSB/EiJ	ENSIUOG00005006806	pseudogene	Chr14:101549282-101551402 (-)
WSB/EiJ	ENSIUOG00005046015	pseudogene	ChrX:89498365-89500485 (+)
WSB/EiJ	ENSIUOG00005041733	pseudogene	Chr11:43368221-43370408 (-)
WSB/EiJ	ENSIUOG00005027806	pseudogene	Chr13:59043603-59045723 (+)
WSB/EiJ	ENSIUOG00005007544	pseudogene	Chr3:117258631-117260751 (+)
WSB/EiJ	ENSIUOG00005038550	pseudogene	Chr13:13582512-13584632 (+)

Homology

• Gene Tree
  Gm48416
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  91

• Ensembl
  ENSMUSG00000114123 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114123	Ensembl Gene Model | MGI Sequence Detail	2121	C57BL/6J
transcript	ENSMUST00000222999	Ensembl | MGI Sequence Detail	2121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;