Gm48407 Pseudogene Detail

Summary

• Symbol
  Gm48407
• Name
  predicted gene, 48407

• Feature Type
  pseudogene
• IDs
  MGI:6097897
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:36292981-36293195 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  135

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097897	pseudogene	Chr9:36292981-36293195 (+)
129S1/SvImJ	ENSMUSG00200017940	pseudogene	Chr10:71276692-71276906 (-)
129S1/SvImJ	ENSMUSG00200013184	pseudogene	Chr6:76882284-76882498 (+)
129S1/SvImJ	ENSMUSG00200025762	pseudogene	Chr14:105653120-105653332 (+)
129S1/SvImJ	ENSMUSG00200026341	pseudogene	Chr14:8767519-8767733 (+)
129S1/SvImJ	ENSMUSG00200040101	pseudogene	Chr9:33270355-33270569 (+)
129S1/SvImJ	ENSMUSG00200004701	pseudogene	Chr12:53963355-53963569 (+)
129S1/SvImJ	ENSMUSG00200006547	pseudogene	Chr13:74635103-74635317 (-)
129S1/SvImJ	ENSMUSG00200007868	pseudogene	Chr2:136340133-136340347 (+)
129S1/SvImJ	ENSMUSG00200046706	pseudogene	Chr3:95574721-95574915 (+)
129S1/SvImJ	ENSMUSG00200010988	pseudogene	Chr4:91169527-91169721 (+)
129S1/SvImJ	ENSMUSG00200013890	pseudogene	Chr10:122470935-122471149 (-)
129S1/SvImJ	ENSMUSG00200001485	pseudogene	Chr5:74015620-74015834 (-)
A/J	ENSMUSG00195033083	pseudogene	Chr1:63142215-63142428 (-)
A/J	ENSMUSG00195051399	pseudogene	Chr9:36635570-36635784 (+)
A/J	ENSMUSG00195049713	pseudogene	Chr9:33061830-33062044 (+)
A/J	ENSMUSG00195020149	pseudogene	Chr9:646214-646428 (+)
A/J	ENSMUSG00195011638	pseudogene	Chr8:2993163-2993377 (+)
A/J	ENSMUSG00195053618	pseudogene	Chr7:2587115-2587329 (+)
A/J	ENSMUSG00195012891	pseudogene	Chr5:3212856-3213070 (+)
A/J	ENSMUSG00195040858	pseudogene	Chr13:23615064-23615258 (+)
A/J	ENSMUSG00195017949	pseudogene	Chr12:7912488-7912702 (-)
A/J	ENSMUSG00195006366	pseudogene	Chr10:71588731-71588945 (-)
A/J	ENSMUSG00195003332	pseudogene	Chr10:49611821-49612035 (+)
A/J	ENSMUSG00195033152	pseudogene	ChrX:77522259-77522473 (-)
AKR/J	ENSMUSG00220044008	pseudogene	Chr14:40371076-40371290 (-)
AKR/J	ENSMUSG00220035435	pseudogene	Chr3:110532241-110532455 (-)
AKR/J	ENSMUSG00220002557	pseudogene	Chr14:86825043-86825257 (-)
AKR/J	ENSMUSG00220016950	pseudogene	Chr13:73695924-73696138 (-)
AKR/J	ENSMUSG00220017809	pseudogene	Chr16:8981939-8982153 (+)
AKR/J	ENSMUSG00220029853	pseudogene	Chr17:12388179-12388393 (+)
AKR/J	ENSMUSG00220053048	pseudogene	Chr17:36399583-36399797 (-)
AKR/J	ENSMUSG00220014239	pseudogene	Chr17:73246548-73246762 (-)
AKR/J	ENSMUSG00220017286	pseudogene	Chr3:3988170-3988384 (+)
AKR/J	ENSMUSG00220006706	pseudogene	Chr8:53560291-53560505 (-)
AKR/J	ENSMUSG00220048241	pseudogene	Chr9:32348001-32348214 (-)
AKR/J	ENSMUSG00220047471	pseudogene	Chr9:33147769-33147983 (+)
BALB/cJ	ENSMUSG00180002073	pseudogene	Chr4:18013367-18013581 (-)
BALB/cJ	ENSMUSG00180048438	pseudogene	Chr9:33190132-33190346 (+)
BALB/cJ	ENSMUSG00180010820	pseudogene	Chr6:56459348-56459562 (+)
BALB/cJ	ENSMUSG00180013158	pseudogene	ChrX:27961010-27961224 (-)
BALB/cJ	ENSMUSG00180012732	pseudogene	Chr10:48914845-48915059 (-)
BALB/cJ	ENSMUSG00180010451	pseudogene	Chr14:81377890-81378084 (-)
BALB/cJ	ENSMUSG00180004887	pseudogene	Chr4:9609734-9609948 (-)
BALB/cJ	ENSMUSG00180054969	pseudogene	Chr2:86374406-86374600 (+)
BALB/cJ	ENSMUSG00180026759	pseudogene	Chr13:23920306-23920500 (+)
BALB/cJ	ENSMUSG00180028632	pseudogene	Chr4:32374528-32374742 (+)
BALB/cJ	ENSMUSG00180046280	pseudogene	Chr7:31036225-31036439 (-)
C3H/HeJ	ENSMUSG00175009526	pseudogene	ChrX:46888096-46888310 (+)
C3H/HeJ	ENSMUSG00175032333	pseudogene	ChrX:66950602-66950816 (+)
C3H/HeJ	ENSMUSG00175001807	pseudogene	Chr5:59793801-59794015 (-)
C3H/HeJ	ENSMUSG00175006809	pseudogene	Chr4:63700439-63700653 (-)
C3H/HeJ	ENSMUSG00175018995	pseudogene	Chr4:18513090-18513304 (-)
C3H/HeJ	ENSMUSG00175018972	pseudogene	Chr4:12581970-12582184 (+)
C3H/HeJ	ENSMUSG00175029484	pseudogene	ChrX:101816802-101817016 (-)
C3H/HeJ	ENSMUSG00175000626	pseudogene	Chr1:102362695-102362909 (-)
C3H/HeJ	ENSMUSG00175051449	pseudogene	Chr7:2554780-2554994 (+)
C3H/HeJ	ENSMUSG00175048065	pseudogene	Chr9:33191280-33191494 (+)
C57BL/6NJ	ENSMUSG00215023053	pseudogene	ChrX:17259050-17259264 (+)
C57BL/6NJ	ENSMUSG00215032167	pseudogene	Chr6:138662276-138662490 (+)
C57BL/6NJ	ENSMUSG00215039649	pseudogene	Chr9:13418266-13418476 (+)
C57BL/6NJ	ENSMUSG00215033984	pseudogene	Chr9:33192647-33192861 (+)
C57BL/6NJ	ENSMUSG00215016488	pseudogene	Chr10:28847957-28848171 (+)
C57BL/6NJ	ENSMUSG00215029562	pseudogene	Chr14:105015563-105015775 (+)
C57BL/6NJ	ENSMUSG00215004904	pseudogene	Chr14:81305133-81305347 (+)
C57BL/6NJ	ENSMUSG00215006552	pseudogene	Chr15:66815187-66815401 (-)
C57BL/6NJ	ENSMUSG00215019098	pseudogene	Chr13:24081969-24082163 (+)
C57BL/6NJ	ENSMUSG00215027247	pseudogene	Chr16:54833664-54833878 (+)
C57BL/6NJ	ENSMUSG00215044086	pseudogene	Chr17:16554061-16554275 (+)
C57BL/6NJ	ENSMUSG00215028345	pseudogene	Chr6:108210001-108210215 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045082	pseudogene	Chr9:33161378-33161592 (+)
CBA/J	ENSMUSG00210045652	pseudogene	Chr9:33210701-33210916 (+)
CBA/J	ENSMUSG00210001277	pseudogene	Chr5:146005872-146006086 (+)
CBA/J	ENSMUSG00210019010	pseudogene	ChrX:43679262-43679476 (+)
CBA/J	ENSMUSG00210010195	pseudogene	Chr12:45301481-45301695 (+)
CBA/J	ENSMUSG00210005208	pseudogene	Chr14:81614149-81614364 (-)
CBA/J	ENSMUSG00210008746	pseudogene	Chr12:19826790-19827004 (-)
CBA/J	ENSMUSG00210011104	pseudogene	Chr9:9694525-9694739 (+)
CBA/J	ENSMUSG00210030135	pseudogene	Chr1:46757871-46758085 (+)
DBA/2J	ENSMUSG00185002898	pseudogene	Chr4:9985598-9985812 (-)
DBA/2J	ENSMUSG00185038569	pseudogene	Chr14:9026531-9026725 (+)
DBA/2J	ENSMUSG00185011143	pseudogene	Chr10:8701060-8701274 (+)
DBA/2J	ENSMUSG00185016292	pseudogene	Chr14:37947537-37947751 (+)
DBA/2J	ENSMUSG00185039253	pseudogene	Chr9:33297206-33297420 (+)
DBA/2J	ENSMUSG00185041141	pseudogene	Chr9:32487976-32488189 (-)
DBA/2J	ENSMUSG00185000469	pseudogene	Chr3:45421658-45421872 (+)
DBA/2J	ENSMUSG00185020740	pseudogene	Chr13:91650816-91651010 (-)
DBA/2J	ENSMUSG00185003184	pseudogene	Chr4:88409482-88409676 (+)
DBA/2J	ENSMUSG00185005388	pseudogene	Chr9:4268536-4268730 (+)
FVB/NJ	ENSMUSG00205015901	pseudogene	Chr12:45106730-45106944 (+)
FVB/NJ	ENSMUSG00205008278	pseudogene	Chr10:71369546-71369760 (-)
FVB/NJ	ENSMUSG00205016316	pseudogene	Chr18:49054845-49055059 (-)
FVB/NJ	ENSMUSG00205026385	pseudogene	ChrX:16265956-16266170 (+)
FVB/NJ	ENSMUSG00205024454	pseudogene	Chr11:25137384-25137598 (+)
FVB/NJ	ENSMUSG00205046048	pseudogene	Chr9:33556970-33557184 (+)
FVB/NJ	ENSMUSG00205033954	pseudogene	Chr6:56325242-56325456 (+)
FVB/NJ	ENSMUSG00205031816	pseudogene	Chr4:115348170-115348384 (+)
FVB/NJ	ENSMUSG00205028227	pseudogene	Chr14:351116-351329 (+)
FVB/NJ	ENSMUSG00205007837	pseudogene	Chr13:107883648-107883862 (-)
FVB/NJ	ENSMUSG00205004511	pseudogene	Chr19:10578795-10579009 (-)
FVB/NJ	ENSMUSG00205004451	pseudogene	Chr1:46701434-46701648 (+)
JF1/MsJ	ENSUMUG00000033749	pseudogene	Chr2:128404653-128404867 (-)
JF1/MsJ	ENSUMUG00000009847	pseudogene	Chr9:4317356-4317550 (+)
JF1/MsJ	ENSUMUG00000000284	pseudogene	Chr1:109005563-109005777 (-)
JF1/MsJ	ENSUMUG00000032106	pseudogene	Chr10:45384242-45384456 (-)
JF1/MsJ	ENSUMUG00000013212	pseudogene	Chr14:114212158-114212352 (+)
JF1/MsJ	ENSUMUG00000000802	pseudogene	Chr2:43356292-43356506 (-)
JF1/MsJ	ENSUMUG00000004441	pseudogene	Chr4:88597033-88597227 (+)
JF1/MsJ	ENSUMUG00000057974	pseudogene	Chr7:21900331-21900545 (+)
JF1/MsJ	ENSUMUG00000041639	pseudogene	Chr8:81806671-81806885 (-)
JF1/MsJ	ENSUMUG00000046340	pseudogene	Chr9:33425553-33425767 (+)
JF1/MsJ	ENSUMUG00000033637	pseudogene	ChrX:68324779-68324993 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190039822	pseudogene	Chr16:20614525-20614719 (-)
NOD/ShiLtJ	ENSMUSG00190016793	pseudogene	Chr2:106961083-106961297 (-)
NOD/ShiLtJ	ENSMUSG00190040474	pseudogene	Chr4:137191877-137192093 (-)
NOD/ShiLtJ	ENSMUSG00190013975	pseudogene	Chr5:3066094-3066308 (+)
NOD/ShiLtJ	ENSMUSG00190023487	pseudogene	Chr9:4172009-4172203 (+)
NOD/ShiLtJ	ENSMUSG00190030169	pseudogene	Chr9:33329300-33329514 (+)
NOD/ShiLtJ	ENSMUSG00190004860	pseudogene	Chr15:66924360-66924574 (-)
NOD/ShiLtJ	ENSMUSG00190045078	pseudogene	ChrX:9022342-9022552 (+)
NOD/ShiLtJ	ENSMUSG00190037049	pseudogene	Chr14:392192-392405 (+)
NOD/ShiLtJ	ENSMUSG00190028480	pseudogene	Chr16:9184793-9185007 (+)
NOD/ShiLtJ	ENSMUSG00190008283	pseudogene	Chr10:71646594-71646808 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005013920	pseudogene	Chr10:100837942-100838156 (+)
WSB/EiJ	ENSIUOG00005003975	pseudogene	Chr1:46579062-46579276 (+)
WSB/EiJ	ENSIUOG00005021833	pseudogene	Chr6:58341881-58342095 (+)
WSB/EiJ	ENSIUOG00005015498	pseudogene	Chr10:50031671-50031885 (+)
WSB/EiJ	ENSIUOG00005013816	pseudogene	Chr11:25125614-25125828 (+)
WSB/EiJ	ENSIUOG00005026611	pseudogene	Chr6:108382846-108383060 (-)
WSB/EiJ	ENSIUOG00005004026	pseudogene	Chr9:87128156-87128370 (-)
WSB/EiJ	ENSIUOG00005011034	pseudogene	Chr17:79388507-79388721 (+)
WSB/EiJ	ENSIUOG00005014759	pseudogene	Chr4:9528466-9528680 (-)
WSB/EiJ	ENSIUOG00005003336	pseudogene	Chr4:98378413-98378627 (+)
WSB/EiJ	ENSIUOG00005046494	pseudogene	Chr9:32817445-32817659 (+)
WSB/EiJ	ENSIUOG00005009984	pseudogene	Chr18:40827434-40827648 (+)

Homology

• Gene Tree
  Gm48407
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm48407
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  137

• Ensembl
  ENSMUSG00000110812 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110812	Ensembl Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	ENSMUST00000215264	Ensembl | MGI Sequence Detail	215	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
• Latest
  J:369525 Noda T, et al., Multiple genes in the Pate5-13 genomic region contribute to ADAM3 processing. Biol Reprod. 2024 Jan 13;