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Gm48401 Pseudogene Detail
Summary
  • Symbol
    Gm48401
  • Name
    predicted gene, 48401
Location &
Maps
more
  • Sequence Map
    Chr9:36288270-36292104 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    93 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_6097889
 pseudogene Chr9:36288270-36292104 (-)
129S1/SvImJ ENSMUSG00200040123
 pseudogene Chr9:33265644-33269478 (-)
A/J ENSMUSG00195049770
 pseudogene Chr9:33057119-33060953 (-)
AKR/J ENSMUSG00220047505
 pseudogene Chr9:33143057-33146893 (-)
BALB/cJ ENSMUSG00180048481
 pseudogene Chr9:33185420-33189254 (-)
C3H/HeJ ENSMUSG00175048147
 pseudogene Chr9:33186569-33190403 (-)
C57BL/6NJ ENSMUSG00215034130
 pseudogene Chr9:33187936-33191770 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005045107
 pseudogene Chr9:33156668-33160502 (-)
CBA/J ENSMUSG00210045718
 pseudogene Chr9:33205990-33209825 (-)
DBA/2J ENSMUSG00185039325
 pseudogene Chr9:33292494-33296330 (-)
FVB/NJ ENSMUSG00205046127
 pseudogene Chr9:33552259-33556093 (-)
JF1/MsJ ENSUMUG00000046546
 pseudogene Chr9:33420843-33424677 (-)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190030355
 pseudogene Chr9:33324588-33328424 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005046564
 pseudogene Chr9:32812733-32816569 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for a transposon-induced allele exhibit embryonic lethality before E10.5 and early developmental delay, and show cardiac, vascular system, and liver abnormalities.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      16
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000111327 Ensembl Gene Model | MGI Sequence Detail 3835 C57BL/6J ±  kb
    transcript ENSMUST00000215904 Ensembl | MGI Sequence Detail 3835 Not Applicable  
    For the selected sequence
    References
    more
    • Summaries
      All 4
      Phenotypes 3
    • Earliest
      J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
    • Latest
      J:378174 Yan B, et al., Embryonic Lethal Phenotyping to Identify Candidate Genes Related with Birth Defects. Int J Mol Sci. 2024 Aug 13;25(16)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory