Gm48400 Pseudogene Detail

Summary

• Symbol
  Gm48400
• Name
  predicted gene, 48400

• Feature Type
  pseudogene
• IDs
  MGI:6097888
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:10606373-10606870 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097888	pseudogene	Chr10:10606373-10606870 (+)
129S1/SvImJ	ENSMUSG00200010636	pseudogene	Chr10:7616254-7616751 (+)
A/J	ENSMUSG00195010433	pseudogene	Chr10:7509231-7509728 (+)
AKR/J	ENSMUSG00220007853	pseudogene	Chr10:7631423-7631920 (+)
BALB/cJ	ENSMUSG00180026048	pseudogene	Chr10:7671198-7671695 (+)
C3H/HeJ	ENSMUSG00175013477	pseudogene	Chr10:7661946-7662443 (+)
C57BL/6NJ	ENSMUSG00215005636	pseudogene	Chr10:7550261-7550758 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018129	pseudogene	Chr10:7608618-7609115 (+)
CBA/J	ENSMUSG00210012681	pseudogene	Chr10:7607582-7608079 (+)
DBA/2J	ENSMUSG00185010881	pseudogene	Chr10:7650301-7650798 (+)
FVB/NJ	ENSMUSG00205008879	pseudogene	Chr10:7630307-7630804 (+)
JF1/MsJ	ENSUMUG00000039560	pseudogene	Chr10:7699188-7699685 (+)
LP/J	ENSMUSG00230017782	pseudogene	Chr10:9270568-9271065 (+)
NOD/ShiLtJ	ENSMUSG00190025978	pseudogene	Chr10:7617695-7618192 (+)
NZO/HlLtJ	ENSMUSG00225017022	pseudogene	Chr10:13798903-13799400 (+)
PWK/PhJ	ENSLUMG00010021229	pseudogene	Chr10:7434643-7435140 (+)
SPRET/EiJ	ENSMSPG00010007229	pseudogene	Chr10:7790915-7791412 (+)
WSB/EiJ	ENSIUOG00005014491	pseudogene	Chr10:7545691-7546188 (+)

Homology

• Gene Tree
  Gm48400
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112772 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112772	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000220033	Ensembl | MGI Sequence Detail	498	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;