Gm48399 Gene Detail

Summary

• Symbol
  Gm48399
• Name
  predicted gene, 48399

• Feature Type
  lncRNA gene
• IDs
  MGI:6097886
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:78522298-78532317 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  242 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097886	lncRNA gene	Chr13:78522298-78532317 (+)
129S1/SvImJ	ENSMUSG00200005988	lncRNA gene	Chr13:72929666-72939685 (+)
A/J	ENSMUSG00195026021	lncRNA gene	Chr13:73476830-73486849 (+)
AKR/J	ENSMUSG00220016667	lncRNA gene	Chr13:72014684-72024702 (+)
BALB/cJ	ENSMUSG00180001498	lncRNA gene	Chr13:73973548-73983567 (+)
C3H/HeJ	ENSMUSG00175020257	lncRNA gene	Chr13:74214459-74224478 (+)
C57BL/6NJ	ENSMUSG00215002588	lncRNA gene	Chr13:74099555-74109574 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004102	lncRNA gene	Chr13:73486435-73490350 (+)
CBA/J	ENSMUSG00210005624	lncRNA gene	Chr13:73503368-73513388 (+)
DBA/2J	ENSMUSG00185019044	lncRNA gene	Chr13:77189036-77199055 (+)
FVB/NJ	ENSMUSG00205014701	lncRNA gene	Chr13:72968921-72978941 (+)
JF1/MsJ	ENSUMUG00000034417	lncRNA gene	Chr13:76958181-76962087 (+)
LP/J	ENSMUSG00230027836	lncRNA gene	Chr13:87170550-87180569 (+)
NOD/ShiLtJ	ENSMUSG00190008566	lncRNA gene	Chr13:73521356-73525253 (+)
NZO/HlLtJ	ENSMUSG00225028356	lncRNA gene	Chr13:79693678-79703697 (+)
PWK/PhJ	ENSLUMG00010014508	lncRNA gene	Chr13:73092273-73096183 (+)
SPRET/EiJ	ENSMSPG00010001436	lncRNA gene	Chr13:73946423-73950306 (+)
WSB/EiJ	ENSIUOG00005017769	lncRNA gene	Chr13:72770705-72774606 (+)

Homology

• Gene Tree
  Gm48399
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114632 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114632	Ensembl Gene Model | MGI Sequence Detail	10020	C57BL/6J
transcript	ENSMUST00000225777	Ensembl | MGI Sequence Detail	413	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;