Gm48350 Gene Detail

Summary

• Symbol
  Gm48350
• Name
  predicted gene, 48350

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:6097814
  NCBI Gene: 115488190
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:95147128-95153956 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  357 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097814	lncRNA gene	Chr13:95147128-95160298 (-)
129S1/SvImJ	ENSMUSG00200009498	lncRNA gene	Chr13:89651649-89662760 (-)
A/J	ENSMUSG00195024409	lncRNA gene	Chr13:90147232-90158337 (-)
AKR/J	ENSMUSG00220014163	lncRNA gene	Chr13:88607697-88618808 (-)
BALB/cJ	ENSMUSG00180038594	lncRNA gene	Chr13:90688306-90699415 (-)
C3H/HeJ	ENSMUSG00175018020	lncRNA gene	Chr13:90851837-90862948 (-)
C57BL/6NJ	ENSMUSG00215035112	lncRNA gene	Chr13:90749590-90760699 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009930	lncRNA gene	Chr13:89951001-89961623 (-)
CBA/J	ENSMUSG00210024693	lncRNA gene	Chr13:90173597-90184706 (-)
DBA/2J	ENSMUSG00185020212	lncRNA gene	Chr13:93834299-93845410 (-)
FVB/NJ	ENSMUSG00205008739	lncRNA gene	Chr13:89635633-89646742 (-)
JF1/MsJ	ENSUMUG00000033015	lncRNA gene	Chr13:93530849-93541548 (-)
LP/J	ENSMUSG00230037911	lncRNA gene	Chr13:103852250-103863359 (-)
NOD/ShiLtJ	ENSMUSG00190018657	lncRNA gene	Chr13:90530484-90541593 (-)
NZO/HlLtJ	ENSMUSG00225034163	lncRNA gene	Chr13:96365898-96377007 (-)
PWK/PhJ	ENSLUMG00010011598	lncRNA gene	Chr13:89627881-89638618 (-)
SPRET/EiJ	ENSMSPG00010009766	lncRNA gene	Chr13:90885688-90896395 (-)
WSB/EiJ	ENSIUOG00005032173	lncRNA gene	Chr13:89554468-89565705 (-)

Homology

• Gene Tree
  Gm48350
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000114014 (Evidence)
• NCBI Gene
  115488190

Representative Sequences			Length	Strain/Species
genomic	115488190	NCBI Gene Model | MGI Sequence Detail	6829	C57BL/6J
transcript	XM_030247537	RefSeq | MGI Sequence Detail	5332	C57BL/6J
polypeptide	XP_030103397	RefSeq | MGI Sequence Detail	248	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;