Gm48348 Pseudogene Detail

Summary

• Symbol
  Gm48348
• Name
  predicted gene, 48348

• Feature Type
  pseudogene
• IDs
  MGI:6097812
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:36001216-36003655 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  162

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097812	pseudogene	Chr9:36001216-36003655 (-)
129S1/SvImJ	ENSMUSG00200001089	pseudogene	Chr3:5113232-5115671 (-)
129S1/SvImJ	ENSMUSG00200016073	pseudogene	ChrX:17010355-17012794 (+)
129S1/SvImJ	ENSMUSG00200009817	pseudogene	Chr13:82138677-82141116 (+)
129S1/SvImJ	ENSMUSG00200001066	pseudogene	Chr3:1139668-1142107 (-)
129S1/SvImJ	ENSMUSG00200019466	pseudogene	Chr3:75259468-75261907 (-)
129S1/SvImJ	ENSMUSG00200007383	pseudogene	Chr13:6121823-6124253 (-)
129S1/SvImJ	ENSMUSG00200027750	pseudogene	Chr3:113678132-113680558 (+)
129S1/SvImJ	ENSMUSG00200040251	pseudogene	Chr9:32980844-32983283 (-)
129S1/SvImJ	ENSMUSG00200024994	pseudogene	ChrX:99325036-99327475 (+)
129S1/SvImJ	ENSMUSG00200035334	pseudogene	Chr11:10901674-10904102 (-)
A/J	ENSMUSG00195001282	pseudogene	Chr3:5455180-5457619 (-)
A/J	ENSMUSG00195022940	pseudogene	Chr12:98204219-98206657 (-)
A/J	ENSMUSG00195050388	pseudogene	Chr9:32772280-32774719 (-)
A/J	ENSMUSG00195003779	pseudogene	Chr4:39092021-39094461 (-)
A/J	ENSMUSG00195017655	pseudogene	Chr3:113925906-113928344 (+)
A/J	ENSMUSG00195012145	pseudogene	Chr3:75321583-75324014 (-)
A/J	ENSMUSG00195001279	pseudogene	Chr3:1473754-1476193 (-)
A/J	ENSMUSG00195009615	pseudogene	Chr18:2983410-2985849 (+)
A/J	ENSMUSG00195024790	pseudogene	Chr13:82676505-82678944 (+)
A/J	ENSMUSG00195013747	pseudogene	Chr13:5527972-5530402 (-)
A/J	ENSMUSG00195024807	pseudogene	Chr11:10731935-10734363 (-)
AKR/J	ENSMUSG00220009640	pseudogene	Chr11:10814940-10817377 (-)
AKR/J	ENSMUSG00220013840	pseudogene	ChrX:97323528-97325967 (+)
AKR/J	ENSMUSG00220018554	pseudogene	ChrX:16513624-16516063 (+)
AKR/J	ENSMUSG00220047235	pseudogene	Chr9:32812718-32815158 (-)
AKR/J	ENSMUSG00220004439	pseudogene	Chr6:22206002-22208441 (-)
AKR/J	ENSMUSG00220027300	pseudogene	Chr3:112321396-112323834 (+)
AKR/J	ENSMUSG00220017294	pseudogene	Chr3:5456908-5459347 (-)
AKR/J	ENSMUSG00220017282	pseudogene	Chr3:1442938-1445377 (-)
AKR/J	ENSMUSG00220016834	pseudogene	Chr18:51633403-51635842 (-)
AKR/J	ENSMUSG00220001775	pseudogene	Chr15:15351069-15353508 (-)
AKR/J	ENSMUSG00220014335	pseudogene	Chr13:81153730-81156169 (+)
BALB/cJ	ENSMUSG00180016990	pseudogene	Chr13:83165531-83167970 (+)
BALB/cJ	ENSMUSG00180032168	pseudogene	Chr3:113869855-113872293 (+)
BALB/cJ	ENSMUSG00180007510	pseudogene	Chr3:1466081-1468520 (-)
BALB/cJ	ENSMUSG00180013068	pseudogene	Chr18:52214046-52216485 (-)
BALB/cJ	ENSMUSG00180010022	pseudogene	Chr15:15433558-15435997 (-)
BALB/cJ	ENSMUSG00180007521	pseudogene	Chr3:5466786-5469225 (-)
BALB/cJ	ENSMUSG00180010766	pseudogene	Chr13:5933512-5935942 (-)
BALB/cJ	ENSMUSG00180028758	pseudogene	Chr4:38678832-38681272 (-)
BALB/cJ	ENSMUSG00180029782	pseudogene	Chr11:10740534-10742962 (-)
BALB/cJ	ENSMUSG00180048853	pseudogene	Chr9:32900598-32903037 (-)
BALB/cJ	ENSMUSG00180024386	pseudogene	ChrX:16947283-16949722 (+)
C3H/HeJ	ENSMUSG00175037195	pseudogene	Chr12:100016942-100019380 (-)
C3H/HeJ	ENSMUSG00175009078	pseudogene	Chr13:5981684-5984114 (-)
C3H/HeJ	ENSMUSG00175024252	pseudogene	Chr13:83372377-83374816 (+)
C3H/HeJ	ENSMUSG00175002063	pseudogene	Chr15:15592580-15595019 (-)
C3H/HeJ	ENSMUSG00175038567	pseudogene	Chr18:51828409-51830848 (-)
C3H/HeJ	ENSMUSG00175010828	pseudogene	Chr11:10785736-10788173 (-)
C3H/HeJ	ENSMUSG00175005243	pseudogene	Chr3:1476036-1478475 (-)
C3H/HeJ	ENSMUSG00175005255	pseudogene	Chr3:5463748-5466187 (-)
C3H/HeJ	ENSMUSG00175029189	pseudogene	Chr3:113410686-113413124 (+)
C3H/HeJ	ENSMUSG00175051467	pseudogene	Chr7:4038879-4041318 (+)
C3H/HeJ	ENSMUSG00175048531	pseudogene	Chr9:32901771-32904210 (-)
C57BL/6NJ	ENSMUSG00215035300	pseudogene	Chr9:32900888-32903327 (-)
C57BL/6NJ	ENSMUSG00215036337	pseudogene	Chr11:10798498-10800926 (-)
C57BL/6NJ	ENSMUSG00215027017	pseudogene	Chr18:2704204-2706643 (+)
C57BL/6NJ	ENSMUSG00215002174	pseudogene	Chr3:75693154-75695593 (-)
C57BL/6NJ	ENSMUSG00215040714	pseudogene	Chr18:51189455-51191894 (-)
C57BL/6NJ	ENSMUSG00215030267	pseudogene	Chr4:148525938-148528377 (+)
C57BL/6NJ	ENSMUSG00215005818	pseudogene	Chr3:1452301-1454740 (-)
C57BL/6NJ	ENSMUSG00215005848	pseudogene	Chr3:5478913-5481352 (-)
C57BL/6NJ	ENSMUSG00215003127	pseudogene	Chr13:83240683-83243122 (+)
C57BL/6NJ	ENSMUSG00215027051	pseudogene	Chr13:6235188-6237618 (-)
C57BL/6NJ	ENSMUSG00215042732	pseudogene	Chr12:96678869-96681307 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022548	pseudogene	Chr12:96080846-96083284 (-)
CAST/EiJ	ENSTCUG00005026615	pseudogene	Chr13:6140187-6142629 (-)
CAST/EiJ	ENSTCUG00005014397	pseudogene	Chr15:42368151-42370590 (-)
CAST/EiJ	ENSTCUG00005000380	pseudogene	Chr3:1007079-1009518 (+)
CAST/EiJ	ENSTCUG00005000377	pseudogene	Chr3:579223-581662 (+)
CAST/EiJ	ENSTCUG00005034307	pseudogene	Chr6:65891603-65894042 (-)
CAST/EiJ	ENSTCUG00005051528	pseudogene	Chr6:119972800-119975239 (+)
CAST/EiJ	ENSTCUG00005045888	pseudogene	Chr9:32871710-32874149 (-)
CAST/EiJ	ENSTCUG00005002071	pseudogene	Chr3:74780221-74782660 (-)
CBA/J	ENSMUSG00210001028	pseudogene	Chr3:5448916-5451355 (-)
CBA/J	ENSMUSG00210003185	pseudogene	Chr3:114019126-114021564 (+)
CBA/J	ENSMUSG00210023292	pseudogene	Chr13:5509782-5512212 (-)
CBA/J	ENSMUSG00210024848	pseudogene	Chr13:82647143-82649582 (+)
CBA/J	ENSMUSG00210005037	pseudogene	Chr15:15595419-15597858 (-)
CBA/J	ENSMUSG00210001016	pseudogene	Chr3:1464024-1466463 (-)
CBA/J	ENSMUSG00210034022	pseudogene	Chr18:51761238-51763677 (-)
CBA/J	ENSMUSG00210018626	pseudogene	Chr11:10777691-10780119 (-)
CBA/J	ENSMUSG00210047260	pseudogene	Chr9:32893123-32895562 (-)
CBA/J	ENSMUSG00210026126	pseudogene	Chr3:75336634-75339065 (-)
DBA/2J	ENSMUSG00185003510	pseudogene	Chr15:15533502-15535941 (-)
DBA/2J	ENSMUSG00185000599	pseudogene	Chr3:1457392-1459831 (-)
DBA/2J	ENSMUSG00185032110	pseudogene	Chr18:2983155-2985594 (+)
DBA/2J	ENSMUSG00185011157	pseudogene	Chr10:9962466-9964905 (+)
DBA/2J	ENSMUSG00185037725	pseudogene	Chr9:32952663-32955103 (-)
DBA/2J	ENSMUSG00185016194	pseudogene	Chr18:51681287-51683726 (-)
DBA/2J	ENSMUSG00185000605	pseudogene	Chr3:5442174-5444613 (-)
DBA/2J	ENSMUSG00185019615	pseudogene	Chr11:10864779-10867207 (-)
DBA/2J	ENSMUSG00185010621	pseudogene	Chr13:86338918-86341357 (+)
DBA/2J	ENSMUSG00185026192	pseudogene	Chr13:6198329-6200759 (-)
DBA/2J	ENSMUSG00185008645	pseudogene	Chr3:114599219-114601657 (+)
FVB/NJ	ENSMUSG00205039677	pseudogene	Chr11:10799540-10801968 (-)
FVB/NJ	ENSMUSG00205009106	pseudogene	Chr13:82095115-82097554 (+)
FVB/NJ	ENSMUSG00205030319	pseudogene	Chr13:5949989-5952419 (-)
FVB/NJ	ENSMUSG00205038962	pseudogene	Chr18:2738696-2741135 (+)
FVB/NJ	ENSMUSG00205006232	pseudogene	Chr3:1294123-1296562 (-)
FVB/NJ	ENSMUSG00205006246	pseudogene	Chr3:5280588-5283027 (-)
FVB/NJ	ENSMUSG00205008527	pseudogene	Chr3:112948163-112950601 (+)
FVB/NJ	ENSMUSG00205008788	pseudogene	Chr6:16357195-16359631 (-)
FVB/NJ	ENSMUSG00205021529	pseudogene	ChrX:99133794-99136233 (+)
FVB/NJ	ENSMUSG00205020310	pseudogene	Chr18:51123058-51125497 (-)
FVB/NJ	ENSMUSG00205045819	pseudogene	Chr9:33267446-33269885 (-)
JF1/MsJ	ENSUMUG00000011664	pseudogene	Chr3:526249-528688 (+)
JF1/MsJ	ENSUMUG00000011295	pseudogene	Chr3:5270079-5272518 (+)
JF1/MsJ	ENSUMUG00000055636	pseudogene	Chr7:4918421-4920860 (-)
JF1/MsJ	ENSUMUG00000000470	pseudogene	Chr4:154927662-154930101 (+)
JF1/MsJ	ENSUMUG00000055301	pseudogene	Chr16:13169137-13171575 (+)
JF1/MsJ	ENSUMUG00000025422	pseudogene	Chr13:87897988-87900427 (+)
JF1/MsJ	ENSUMUG00000042432	pseudogene	Chr12:103572099-103574537 (-)
JF1/MsJ	ENSUMUG00000055632	pseudogene	Chr7:4619661-4622100 (-)
JF1/MsJ	ENSUMUG00000010072	pseudogene	Chr1:195814666-195817104 (-)
JF1/MsJ	ENSUMUG00000051653	pseudogene	Chr9:33135711-33138150 (-)
JF1/MsJ	ENSUMUG00000047820	pseudogene	Chr6:65105920-65108359 (-)
LP/J	ENSMUSG00230013016	pseudogene	Chr3:116528471-116530897 (+)
LP/J	ENSMUSG00230041907	pseudogene	Chr7:8205735-8208174 (-)
LP/J	ENSMUSG00230004726	pseudogene	Chr11:11891264-11893692 (-)
LP/J	ENSMUSG00230016432	pseudogene	Chr11:25561949-25564388 (-)
LP/J	ENSMUSG00230004804	pseudogene	Chr13:96369286-96371725 (+)
LP/J	ENSMUSG00230000274	pseudogene	Chr3:7374243-7376682 (-)
LP/J	ENSMUSG00230010129	pseudogene	Chr3:77514218-77516657 (-)
LP/J	ENSMUSG00230026657	pseudogene	Chr4:158633809-158636248 (+)
LP/J	ENSMUSG00230031754	pseudogene	Chr6:23698293-23700732 (-)
LP/J	ENSMUSG00230041885	pseudogene	Chr7:7511943-7514382 (-)
LP/J	ENSMUSG00230041895	pseudogene	Chr7:7777885-7780324 (-)
NOD/ShiLtJ	ENSMUSG00190043800	pseudogene	Chr11:10819601-10822029 (-)
NOD/ShiLtJ	ENSMUSG00190019884	pseudogene	Chr13:83013049-83015488 (+)
NOD/ShiLtJ	ENSMUSG00190047037	pseudogene	Chr6:65046861-65049300 (-)
NOD/ShiLtJ	ENSMUSG00190010667	pseudogene	Chr18:2745718-2748157 (+)
NOD/ShiLtJ	ENSMUSG00190036744	pseudogene	Chr18:51391158-51393597 (-)
NOD/ShiLtJ	ENSMUSG00190024047	pseudogene	Chr3:1457400-1459839 (-)
NOD/ShiLtJ	ENSMUSG00190024076	pseudogene	Chr3:5549054-5551493 (-)
NOD/ShiLtJ	ENSMUSG00190002973	pseudogene	Chr3:75820045-75822476 (-)
NOD/ShiLtJ	ENSMUSG00190031303	pseudogene	Chr9:32984742-32987182 (-)
NOD/ShiLtJ	ENSMUSG00190038637	pseudogene	Chr3:114977027-114979453 (+)
NZO/HlLtJ	ENSMUSG00225022749	pseudogene	Chr7:5621473-5623912 (-)
NZO/HlLtJ	ENSMUSG00225039924	pseudogene	Chr12:107643514-107645952 (-)
NZO/HlLtJ	ENSMUSG00225001731	pseudogene	Chr3:9947232-9949671 (-)
NZO/HlLtJ	ENSMUSG00225004150	pseudogene	Chr3:119021586-119024024 (+)
NZO/HlLtJ	ENSMUSG00225007431	pseudogene	Chr4:46254200-46256640 (-)
NZO/HlLtJ	ENSMUSG00225014875	pseudogene	Chr6:25649158-25651597 (-)
NZO/HlLtJ	ENSMUSG00225022163	pseudogene	Chr6:68860706-68863145 (-)
NZO/HlLtJ	ENSMUSG00225022735	pseudogene	Chr7:5355531-5357970 (-)
NZO/HlLtJ	ENSMUSG00225033412	pseudogene	Chr11:13907440-13909868 (-)
NZO/HlLtJ	ENSMUSG00225031095	pseudogene	Chr13:88886489-88888928 (+)
NZO/HlLtJ	ENSMUSG00225001702	pseudogene	Chr3:5918746-5921185 (-)
PWK/PhJ	ENSLUMG00010045992	pseudogene	Chr9:32996653-32998215 (-)
SPRET/EiJ	ENSMSPG00010038089	pseudogene	Chr9:33545038-33546103 (-)
WSB/EiJ	ENSIUOG00005044155	pseudogene	Chr9:32500067-32502506 (-)
WSB/EiJ	ENSIUOG00005050478	pseudogene	Chr7:93356159-93358598 (+)
WSB/EiJ	ENSIUOG00005007541	pseudogene	Chr3:114193915-114196353 (+)
WSB/EiJ	ENSIUOG00005003302	pseudogene	Chr3:75741065-75743501 (-)
WSB/EiJ	ENSIUOG00005000851	pseudogene	Chr3:5469511-5471950 (-)
WSB/EiJ	ENSIUOG00005028812	pseudogene	Chr18:2900020-2902459 (+)
WSB/EiJ	ENSIUOG00005032514	pseudogene	Chr13:82025991-82028430 (+)
WSB/EiJ	ENSIUOG00005024142	pseudogene	Chr13:5479521-5481960 (-)
WSB/EiJ	ENSIUOG00005010578	pseudogene	Chr11:10735282-10737710 (-)
WSB/EiJ	ENSIUOG00005034634	pseudogene	ChrX:13602631-13605070 (+)

Homology

• Gene Tree
  Gm48348
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm48348
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  164

• Ensembl
  ENSMUSG00000111619 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111619	Ensembl Gene Model | MGI Sequence Detail	2440	C57BL/6J
transcript	ENSMUST00000215334	Ensembl | MGI Sequence Detail	2440	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
• Latest
  J:369525 Noda T, et al., Multiple genes in the Pate5-13 genomic region contribute to ADAM3 processing. Biol Reprod. 2024 Jan 13;