Gm48331 Pseudogene Detail

Summary

• Symbol
  Gm48331
• Name
  predicted gene, 48331

• Feature Type
  pseudogene
• IDs
  MGI:6097788
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:25668851-25669121 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097788	pseudogene	Chr9:25668851-25669121 (+)
129S1/SvImJ	ENSMUSG00200008226	pseudogene	Chr9:22652328-22652598 (+)
A/J	ENSMUSG00195006370	pseudogene	Chr9:22464472-22464742 (+)
AKR/J	ENSMUSG00220010519	pseudogene	Chr9:22462425-22462695 (+)
BALB/cJ	ENSMUSG00180007096	pseudogene	Chr9:22598650-22598920 (+)
C3H/HeJ	ENSMUSG00175019847	pseudogene	Chr9:22575133-22575403 (+)
C57BL/6NJ	ENSMUSG00215008873	pseudogene	Chr9:22560445-22560715 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018561	pseudogene	Chr10:6984759-6985028 (+)
CBA/J	ENSMUSG00210022233	pseudogene	Chr9:22616881-22617151 (+)
DBA/2J	ENSMUSG00185002596	pseudogene	Chr9:22657201-22657471 (+)
FVB/NJ	ENSMUSG00205004720	pseudogene	Chr9:22948233-22948503 (+)
JF1/MsJ	ENSUMUG00000016304	pseudogene	Chr9:22788443-22788712 (+)
LP/J	ENSMUSG00230005456	pseudogene	Chr9:23057017-23057287 (+)
NOD/ShiLtJ	ENSMUSG00190006545	pseudogene	Chr9:22650195-22650465 (+)
NZO/HlLtJ	ENSMUSG00225015139	pseudogene	Chr9:23079981-23080251 (+)
PWK/PhJ	ENSLUMG00010009790	pseudogene	Chr9:22658691-22658960 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005016218	pseudogene	Chr9:22129854-22130117 (+)

Homology

• Gene Tree
  Gm48331
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000111416 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111416	Ensembl Gene Model | MGI Sequence Detail	271	C57BL/6J
transcript	ENSMUST00000215068	Ensembl | MGI Sequence Detail	271	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;