Gm48318 Pseudogene Detail

Summary

• Symbol
  Gm48318
• Name
  predicted gene, 48318

• Feature Type
  pseudogene
• IDs
  MGI:6097771
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:18068494-18068641 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097771	pseudogene	Chr12:18068494-18068641 (-)
129S1/SvImJ	ENSMUSG00200024511	pseudogene	Chr12:15071973-15072120 (-)
A/J	ENSMUSG00195021576	pseudogene	Chr12:15744964-15745111 (-)
A/J	ENSMUSG00195021568	pseudogene	Chr12:15117049-15117196 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180009810	pseudogene	Chr12:15128935-15129082 (-)
C3H/HeJ	ENSMUSG00175005921	pseudogene	Chr12:15131415-15131562 (-)
C57BL/6NJ	ENSMUSG00215006341	pseudogene	Chr12:17016643-17016790 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210007622	pseudogene	Chr12:15143355-15143502 (-)
CBA/J	ENSMUSG00210008735	pseudogene	Chr12:17347065-17347212 (+)
DBA/2J	ENSMUSG00185004494	pseudogene	Chr12:18961572-18961719 (+)
DBA/2J	ENSMUSG00185004304	pseudogene	Chr12:15049813-15049960 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000012059	pseudogene	Chr12:19583903-19584050 (+)
JF1/MsJ	ENSUMUG00000008247	pseudogene	Chr12:23199101-23199248 (+)
JF1/MsJ	ENSUMUG00000008110	pseudogene	Chr12:14964786-14964933 (-)
JF1/MsJ	ENSUMUG00000012101	pseudogene	Chr12:19712213-19712360 (+)
LP/J	ENSMUSG00230008124	pseudogene	Chr12:26206041-26206188 (+)
LP/J	ENSMUSG00230008105	pseudogene	Chr12:25928137-25928284 (+)
LP/J	ENSMUSG00230008092	pseudogene	Chr12:25667520-25667667 (-)
LP/J	ENSMUSG00230021799	pseudogene	Chr12:16869134-16869281 (-)
LP/J	ENSMUSG00230007778	pseudogene	Chr12:20372156-20372303 (+)
LP/J	ENSMUSG00230008150	pseudogene	Chr12:26344009-26344156 (+)
NOD/ShiLtJ	ENSMUSG00190013643	pseudogene	Chr12:16215027-16215175 (-)
NZO/HlLtJ	ENSMUSG00225035479	pseudogene	Chr12:28527112-28527259 (+)
NZO/HlLtJ	ENSMUSG00225035426	pseudogene	Chr12:27850588-27850735 (-)
NZO/HlLtJ	ENSMUSG00225035451	pseudogene	Chr12:28389138-28389285 (+)
NZO/HlLtJ	ENSMUSG00225030257	pseudogene	Chr12:18973661-18973808 (-)
NZO/HlLtJ	ENSMUSG00225035202	pseudogene	Chr12:22574351-22574498 (+)
NZO/HlLtJ	ENSMUSG00225035437	pseudogene	Chr12:28111233-28111380 (+)
PWK/PhJ	ENSLUMG00010005273	pseudogene	Chr12:17817005-17817152 (+)
PWK/PhJ	ENSLUMG00010005088	pseudogene	Chr12:14756148-14756295 (-)
SPRET/EiJ	ENSMSPG00010003519	pseudogene	Chr12:15538948-15539095 (-)
WSB/EiJ	ENSIUOG00005001973	pseudogene	Chr12:16103161-16103308 (-)
WSB/EiJ	ENSIUOG00005001734	pseudogene	Chr12:15003588-15003736 (-)

Homology

• Gene Tree
  Gm48318
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000113197 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113197	Ensembl Gene Model | MGI Sequence Detail	148	C57BL/6J
transcript	ENSMUST00000222183	Ensembl | MGI Sequence Detail	148	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;