Gm48313 Gene Detail

Summary

• Symbol
  Gm48313
• Name
  predicted gene, 48313

• Feature Type
  lncRNA gene
• IDs
  MGI:6097764
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:17653242-17657232 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097764	lncRNA gene	Chr12:17653242-17657232 (-)
129S1/SvImJ	ENSMUSG00200023166	lncRNA gene	Chr12:14688722-14692609 (-)
A/J	ENSMUSG00195021220	lncRNA gene	Chr12:14703726-14706369 (-)
AKR/J	ENSMUSG00220027059	lncRNA gene	Chr12:14789500-14793404 (-)
BALB/cJ	ENSMUSG00180010742	lncRNA gene	Chr12:14682324-14684969 (-)
C3H/HeJ	ENSMUSG00175006153	lncRNA gene	Chr12:14716900-14720795 (-)
C57BL/6NJ	ENSMUSG00215005599	lncRNA gene	Chr12:14488534-14492521 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006220	lncRNA gene	Chr12:14204101-14208013 (-)
CBA/J	ENSMUSG00210008403	lncRNA gene	Chr12:14728835-14732730 (-)
DBA/2J	ENSMUSG00185004113	lncRNA gene	Chr12:14635317-14639212 (-)
FVB/NJ	ENSMUSG00205001679	lncRNA gene	Chr12:14587820-14591718 (-)
JF1/MsJ	ENSUMUG00000008560	lncRNA gene	Chr12:14549489-14553491 (-)
LP/J	ENSMUSG00230021994	lncRNA gene	Chr12:16456029-16459949 (-)
NOD/ShiLtJ	ENSMUSG00190014430	lncRNA gene	Chr12:15923773-15927668 (-)
NZO/HlLtJ	ENSMUSG00225030322	lncRNA gene	Chr12:18560318-18564207 (-)
PWK/PhJ	ENSLUMG00010005050	lncRNA gene	Chr12:14329829-14332511 (-)
SPRET/EiJ	ENSMSPG00010003216	lncRNA gene	Chr12:15322702-15325604 (-)
WSB/EiJ	ENSIUOG00005001912	lncRNA gene	Chr12:14714144-14716796 (-)

Homology

• Gene Tree
  Gm48313
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000114062 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114062	Ensembl Gene Model | MGI Sequence Detail	3991	C57BL/6J
transcript	ENSMUST00000222628	Ensembl | MGI Sequence Detail	1192	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;