Gm48275 Gene Detail

Summary

• Symbol
  Gm48275
• Name
  predicted gene, 48275

• Feature Type
  lncRNA gene
• IDs
  MGI:6097702
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:50301140-50301426 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  45

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097702	lncRNA gene	Chr10:50301140-50301426 (-)
129S1/SvImJ	ENSMUSG00200008060	lncRNA gene	Chr10:47186876-47187162 (-)
129S1/SvImJ	ENSMUSG00200032326	lncRNA gene	Chr12:46806855-46807141 (+)
129S1/SvImJ	ENSMUSG00200001223	lncRNA gene	Chr1:27948036-27948322 (-)
129S1/SvImJ	ENSMUSG00200050740	lncRNA gene	Chr4:103055381-103055667 (+)
A/J	ENSMUSG00195002940	lncRNA gene	Chr10:47464710-47464996 (-)
A/J	ENSMUSG00195013137	lncRNA gene	Chr5:116300533-116300819 (+)
A/J	ENSMUSG00195048326	lncRNA gene	Chr4:103598356-103598642 (+)
AKR/J	ENSMUSG00220006911	lncRNA gene	Chr10:47144785-47145071 (-)
BALB/cJ	ENSMUSG00180042351	lncRNA gene	Chr1:161106629-161106915 (+)
BALB/cJ	ENSMUSG00180030594	lncRNA gene	Chr8:115292866-115293152 (-)
BALB/cJ	ENSMUSG00180012618	lncRNA gene	Chr10:47594474-47594760 (-)
C3H/HeJ	ENSMUSG00175010260	lncRNA gene	Chr10:47335747-47336033 (-)
C57BL/6NJ	ENSMUSG00215022231	lncRNA gene	Chr12:47741071-47741357 (+)
C57BL/6NJ	ENSMUSG00215036212	lncRNA gene	Chr11:5767807-5768093 (+)
C57BL/6NJ	ENSMUSG00215002346	lncRNA gene	Chr10:47091349-47091635 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009025	lncRNA gene	Chr10:47311389-47311461 (-)
CBA/J	ENSMUSG00210008591	lncRNA gene	Chr10:47238893-47239179 (-)
CBA/J	ENSMUSG00210018611	lncRNA gene	Chr11:3584217-3584503 (-)
DBA/2J	ENSMUSG00185019571	lncRNA gene	Chr11:3681969-3682255 (-)
DBA/2J	ENSMUSG00185018174	lncRNA gene	Chr5:13830253-13830539 (-)
DBA/2J	ENSMUSG00185045028	lncRNA gene	Chr15:95971743-95972029 (-)
DBA/2J	ENSMUSG00185003474	lncRNA gene	Chr10:47395057-47395343 (-)
DBA/2J	ENSMUSG00185008716	lncRNA gene	Chr10:38401896-38402182 (+)
FVB/NJ	ENSMUSG00205038681	lncRNA gene	ChrX:9787401-9787687 (+)
FVB/NJ	ENSMUSG00205040607	lncRNA gene	Chr7:74586741-74587027 (+)
FVB/NJ	ENSMUSG00205005409	lncRNA gene	Chr10:47288425-47288711 (-)
JF1/MsJ	ENSUMUG00000031474	lncRNA gene	Chr10:47091543-47091661 (-)
LP/J	ENSMUSG00230001991	lncRNA gene	Chr2:56057480-56057766 (-)
LP/J	ENSMUSG00230048621	lncRNA gene	Chr5:124301145-124301431 (+)
LP/J	ENSMUSG00230027756	lncRNA gene	Chr1:164934869-164935155 (+)
LP/J	ENSMUSG00230006556	lncRNA gene	Chr10:49196739-49197025 (-)
LP/J	ENSMUSG00230007920	lncRNA gene	Chr16:62499139-62499425 (-)
NOD/ShiLtJ	ENSMUSG00190045706	lncRNA gene	Chr9:18721140-18721426 (+)
NOD/ShiLtJ	ENSMUSG00190005834	lncRNA gene	Chr10:47552147-47552433 (-)
NZO/HlLtJ	ENSMUSG00225053668	lncRNA gene	Chr12:84616485-84616771 (+)
NZO/HlLtJ	ENSMUSG00225035151	lncRNA gene	Chr5:84391954-84392240 (+)
NZO/HlLtJ	ENSMUSG00225022918	lncRNA gene	Chr10:53477658-53477944 (-)
PWK/PhJ	ENSLUMG00010004998	lncRNA gene	Chr10:47223888-47224006 (-)
SPRET/EiJ	ENSMSPG00010010199	lncRNA gene	Chr18:75000769-75001055 (+)
SPRET/EiJ	ENSMSPG00010021990	lncRNA gene	Chr17:84135147-84135433 (-)
SPRET/EiJ	ENSMSPG00010034536	lncRNA gene	Chr13:40674282-40674568 (+)
SPRET/EiJ	ENSMSPG00010045689	lncRNA gene	Chr2:119362756-119363042 (+)
SPRET/EiJ	ENSMSPG00010017817	lncRNA gene	Chr10:121524214-121524500 (+)
WSB/EiJ	ENSIUOG00005053806	lncRNA gene	Chr7:13788435-13788721 (+)

Homology

• Gene Tree
  Gm48275
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000111202 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111202	Ensembl Gene Model | MGI Sequence Detail	287	C57BL/6J
transcript	ENSMUST00000213811	Ensembl | MGI Sequence Detail	287	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;