Gm48270 Pseudogene Detail

Summary

• Symbol
  Gm48270
• Name
  predicted gene, 48270

• Feature Type
  pseudogene
• IDs
  MGI:6097694
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:50131771-50135618 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097694	pseudogene	Chr10:50131771-50135618 (+)
129S1/SvImJ	ENSMUSG00200007399	pseudogene	Chr10:47017511-47021358 (+)
A/J	ENSMUSG00195003135	pseudogene	Chr10:47295309-47299156 (+)
AKR/J	ENSMUSG00220006219	pseudogene	Chr10:46975371-46979218 (+)
BALB/cJ	ENSMUSG00180012000	pseudogene	Chr10:47425054-47428901 (+)
C3H/HeJ	ENSMUSG00175010111	pseudogene	Chr10:47166382-47170229 (+)
C57BL/6NJ	ENSMUSG00215002265	pseudogene	Chr10:46921960-46925807 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210008247	pseudogene	Chr10:47069522-47073369 (+)
DBA/2J	ENSMUSG00185003272	pseudogene	Chr10:47225676-47229523 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000030298	pseudogene	Chr10:46936266-46940111 (+)
LP/J	ENSMUSG00230006497	pseudogene	Chr10:49027380-49031227 (+)
NOD/ShiLtJ	ENSMUSG00190005723	pseudogene	Chr10:47382770-47386617 (+)
NZO/HlLtJ	ENSMUSG00225022866	pseudogene	Chr10:53308310-53312157 (+)
PWK/PhJ	ENSLUMG00010005124	pseudogene	Chr10:47071175-47075022 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48270
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000112667 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112667	Ensembl Gene Model | MGI Sequence Detail	3848	C57BL/6J
transcript	ENSMUST00000218660	Ensembl | MGI Sequence Detail	3848	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;