Gm48242 Gene Detail

Summary

• Symbol
  Gm48242
• Name
  predicted gene, 48242

• Feature Type
  lncRNA gene
• IDs
  MGI:6097653
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:82203388-82217203 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  385 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097653	lncRNA gene	Chr12:82203388-82217203 (-)
129S1/SvImJ	ENSMUSG00200051369	lncRNA gene	Chr12:74216663-74216918 (-)
A/J	ENSMUSG00195034937	lncRNA gene	Chr12:76846399-76846654 (-)
AKR/J	ENSMUSG00220050308	lncRNA gene	Chr12:74641804-74642059 (-)
BALB/cJ	ENSMUSG00180026949	lncRNA gene	Chr12:75880917-75881172 (-)
C3H/HeJ	ENSMUSG00175046026	lncRNA gene	Chr12:78978421-78978676 (-)
C57BL/6NJ	ENSMUSG00215046919	lncRNA gene	Chr12:75184900-75185155 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035561	lncRNA gene	Chr12:75129981-75130236 (-)
CBA/J	ENSMUSG00210047993	lncRNA gene	Chr12:75392654-75392909 (-)
DBA/2J	ENSMUSG00185044807	lncRNA gene	Chr12:77249136-77249391 (-)
FVB/NJ	ENSMUSG00205043448	lncRNA gene	Chr12:75054367-75054622 (-)
JF1/MsJ	ENSUMUG00000051220	lncRNA gene	Chr12:81253125-81253380 (-)
LP/J	ENSMUSG00230046147	lncRNA gene	Chr12:84303857-84304112 (-)
NOD/ShiLtJ	ENSMUSG00190049332	lncRNA gene	Chr12:74452398-74452653 (-)
NZO/HlLtJ	ENSMUSG00225052032	lncRNA gene	Chr12:86359075-86359330 (-)
PWK/PhJ	ENSLUMG00010029332	lncRNA gene	Chr12:75250290-75250545 (-)
SPRET/EiJ	ENSMSPG00010021053	lncRNA gene	Chr12:77077628-77077878 (-)
WSB/EiJ	ENSIUOG00005046761	lncRNA gene	Chr12:75072376-75072631 (-)

Homology

• Gene Tree
  Gm48242
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000113746 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113746	Ensembl Gene Model | MGI Sequence Detail	13816	C57BL/6J
transcript	ENSMUST00000328800	Ensembl | MGI Sequence Detail	1355	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48242:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116942	Chr12:82217352-82217385 (-)	-166 bp