Gm48241 Pseudogene Detail

Summary

• Symbol
  Gm48241
• Name
  predicted gene, 48241

• Feature Type
  pseudogene
• IDs
  MGI:6097652
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:66388591-66388743 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097652	pseudogene	Chr13:66388591-66388743 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180030125	pseudogene	Chr13:62180927-62181079 (+)
BALB/cJ	ENSMUSG00180030209	pseudogene	Chr13:62429849-62430001 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215012687	pseudogene	Chr13:62177223-62177375 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012223	pseudogene	Chr13:62495997-62496149 (+)
CAST/EiJ	ENSTCUG00005012309	pseudogene	Chr13:62469300-62469452 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185010917	pseudogene	Chr13:63608383-63608535 (+)
DBA/2J	ENSMUSG00185010550	pseudogene	Chr13:64536103-64536251 (+)
DBA/2J	ENSMUSG00185009768	pseudogene	Chr13:63581715-63581867 (-)
DBA/2J	ENSMUSG00185010839	pseudogene	Chr13:63101597-63101749 (+)
DBA/2J	ENSMUSG00185010785	pseudogene	Chr13:65723547-65723699 (+)
DBA/2J	ENSMUSG00185010971	pseudogene	Chr13:64037425-64037577 (+)
DBA/2J	ENSMUSG00185010981	pseudogene	Chr13:64193219-64193371 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000044901	pseudogene	Chr13:64951840-64951990 (+)
JF1/MsJ	ENSUMUG00000041555	pseudogene	Chr13:64043783-64043935 (-)
JF1/MsJ	ENSUMUG00000042802	pseudogene	Chr13:65526581-65526733 (+)
JF1/MsJ	ENSUMUG00000043854	pseudogene	Chr13:63795274-63795426 (-)
JF1/MsJ	ENSUMUG00000040951	pseudogene	Chr13:63645876-63646024 (+)
JF1/MsJ	ENSUMUG00000043292	pseudogene	Chr13:63171495-63171647 (-)
JF1/MsJ	ENSUMUG00000038523	pseudogene	Chr13:64077616-64077768 (+)
JF1/MsJ	ENSUMUG00000044411	pseudogene	Chr13:64443697-64443847 (+)
JF1/MsJ	ENSUMUG00000044667	pseudogene	Chr13:64647310-64647458 (+)
JF1/MsJ	ENSUMUG00000044711	pseudogene	Chr13:64748478-64748626 (-)
LP/J	ENSMUSG00230034567	pseudogene	Chr13:72913901-72914053 (-)
LP/J	ENSMUSG00230036138	pseudogene	Chr13:72439723-72439875 (+)
LP/J	ENSMUSG00230036215	pseudogene	Chr13:72676667-72676819 (-)
LP/J	ENSMUSG00230036363	pseudogene	Chr13:73360435-73360587 (+)
LP/J	ENSMUSG00230036534	pseudogene	Chr13:73755758-73755910 (+)
LP/J	ENSMUSG00230036697	pseudogene	Chr13:74831168-74831320 (-)
LP/J	ENSMUSG00230035817	pseudogene	Chr13:74149062-74149214 (+)
LP/J	ENSMUSG00230036445	pseudogene	Chr13:73471482-73471634 (+)
NOD/ShiLtJ	ENSMUSG00190045243	pseudogene	Chr13:62010925-62011077 (+)
NOD/ShiLtJ	ENSMUSG00190045224	pseudogene	Chr13:61871030-61871182 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48241
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm48241
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000113253 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113253	Ensembl Gene Model | MGI Sequence Detail	153	C57BL/6J
transcript	ENSMUST00000222795	Ensembl | MGI Sequence Detail	153	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:370032 Takeda I, et al., Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes Cells. 2021 Nov;26(11):874-890