Gm48240 Pseudogene Detail

Summary

• Symbol
  Gm48240
• Name
  predicted gene, 48240

• Feature Type
  pseudogene
• IDs
  MGI:6097651
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:66369192-66370284 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097651	pseudogene	Chr13:66369192-66370284 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180030143	pseudogene	Chr13:62301822-62302912 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215020252	pseudogene	Chr13:62458144-62459228 (-)
C57BL/6NJ	ENSMUSG00215012676	pseudogene	Chr13:62165194-62166285 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012221	pseudogene	Chr13:62483723-62484814 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185009760	pseudogene	Chr13:63593027-63594119 (+)
DBA/2J	ENSMUSG00185010802	pseudogene	Chr13:65817621-65818708 (-)
DBA/2J	ENSMUSG00185010500	pseudogene	Chr13:64472011-64473102 (-)
DBA/2J	ENSMUSG00185010744	pseudogene	Chr13:65595057-65596147 (+)
DBA/2J	ENSMUSG00185010486	pseudogene	Chr13:64337966-64339056 (+)
DBA/2J	ENSMUSG00185010373	pseudogene	Chr13:63651830-63652920 (-)
DBA/2J	ENSMUSG00185010905	pseudogene	Chr13:63545796-63546886 (+)
DBA/2J	ENSMUSG00185010240	pseudogene	Chr13:62972490-62973580 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000044344	pseudogene	Chr13:64390177-64391269 (+)
JF1/MsJ	ENSUMUG00000042753	pseudogene	Chr13:65454717-65455801 (-)
JF1/MsJ	ENSUMUG00000040861	pseudogene	Chr13:63475340-63476431 (-)
JF1/MsJ	ENSUMUG00000045047	pseudogene	Chr13:65043175-65044264 (-)
JF1/MsJ	ENSUMUG00000040552	pseudogene	Chr13:62903365-62904456 (-)
JF1/MsJ	ENSUMUG00000041673	pseudogene	Chr13:64343058-64344148 (+)
JF1/MsJ	ENSUMUG00000038386	pseudogene	Chr13:64058237-64059329 (-)
JF1/MsJ	ENSUMUG00000044523	pseudogene	Chr13:64535147-64536236 (-)
JF1/MsJ	ENSUMUG00000042613	pseudogene	Chr13:65142845-65143936 (+)
LP/J	ENSMUSG00230036268	pseudogene	Chr13:72877979-72879069 (+)
LP/J	ENSMUSG00230036217	pseudogene	Chr13:72682721-72734815 (+)
LP/J	ENSMUSG00230035718	pseudogene	Chr13:73743731-73744822 (-)
LP/J	ENSMUSG00230035993	pseudogene	Chr13:75744964-75746054 (+)
LP/J	ENSMUSG00230036874	pseudogene	Chr13:75931554-75932641 (-)
LP/J	ENSMUSG00230035881	pseudogene	Chr13:74509643-74778204 (+)
LP/J	ENSMUSG00230035685	pseudogene	Chr13:73609672-73610762 (+)
LP/J	ENSMUSG00230035515	pseudogene	Chr13:72984036-72985126 (-)
LP/J	ENSMUSG00230034552	pseudogene	Chr13:72925229-72926321 (+)
NOD/ShiLtJ	ENSMUSG00190045152	pseudogene	Chr13:61881992-61883082 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48240
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm48240
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000113713 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113713	Ensembl Gene Model | MGI Sequence Detail	1093	C57BL/6J
transcript	ENSMUST00000221245	Ensembl | MGI Sequence Detail	1093	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:370032 Takeda I, et al., Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes Cells. 2021 Nov;26(11):874-890