Gm48238 Pseudogene Detail

Summary

• Symbol
  Gm48238
• Name
  predicted gene, 48238

• Feature Type
  pseudogene
• IDs
  MGI:6097648
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:6723175-6723444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  40

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097648	pseudogene	Chr13:6723175-6723444 (+)
129S1/SvImJ	ENSMUSG00200006344	pseudogene	Chr13:3893329-3893598 (+)
A/J	ENSMUSG00195012944	pseudogene	Chr13:3304908-3305177 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180009766	pseudogene	Chr13:3713878-3714147 (+)
C3H/HeJ	ENSMUSG00175008611	pseudogene	Chr13:3747221-3747490 (+)
C57BL/6NJ	ENSMUSG00215017812	pseudogene	Chr13:3966830-3967099 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025460	pseudogene	Chr3:21707619-21707888 (-)
CAST/EiJ	ENSTCUG00005034158	pseudogene	Chr2:79383639-79383908 (+)
CAST/EiJ	ENSTCUG00005002542	pseudogene	Chr3:60416534-60416803 (-)
CAST/EiJ	ENSTCUG00005008218	pseudogene	ChrX:102936869-102937138 (-)
CAST/EiJ	ENSTCUG00005009145	pseudogene	Chr19:19895985-19896254 (-)
CAST/EiJ	ENSTCUG00005000732	pseudogene	Chr5:56599945-56600214 (+)
CAST/EiJ	ENSTCUG00005034946	pseudogene	ChrX:24452280-24452549 (-)
CAST/EiJ	ENSTCUG00005041947	pseudogene	ChrX:114925277-114925546 (-)
CAST/EiJ	ENSTCUG00005008240	pseudogene	ChrX:105648495-105648764 (+)
CAST/EiJ	ENSTCUG00005011002	pseudogene	Chr12:28336467-28336736 (-)
CAST/EiJ	ENSTCUG00005034963	pseudogene	ChrX:26223028-26223297 (+)
CAST/EiJ	ENSTCUG00005018333	pseudogene	Chr2:36725211-36725480 (-)
CBA/J	ENSMUSG00210023115	pseudogene	Chr13:3285231-3285500 (+)
DBA/2J	ENSMUSG00185026016	pseudogene	Chr13:3973369-3973638 (+)
FVB/NJ	ENSMUSG00205023302	pseudogene	Chr13:3722655-3722924 (+)
JF1/MsJ	ENSUMUG00000026012	pseudogene	Chr1:94832469-94832738 (-)
JF1/MsJ	ENSUMUG00000024855	pseudogene	Chr6:77743684-77743953 (+)
JF1/MsJ	ENSUMUG00000051028	pseudogene	Chr8:97369607-97369876 (+)
JF1/MsJ	ENSUMUG00000043289	pseudogene	Chr13:58522351-58522620 (-)
JF1/MsJ	ENSUMUG00000057890	pseudogene	Chr17:39048376-39048645 (+)
JF1/MsJ	ENSUMUG00000017788	pseudogene	Chr8:102486442-102486711 (+)
JF1/MsJ	ENSUMUG00000050956	pseudogene	Chr8:96926836-96927105 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010022818	pseudogene	Chr13:44255615-44255884 (-)
PWK/PhJ	ENSLUMG00010001733	pseudogene	Chr4:76293660-76293929 (+)
PWK/PhJ	ENSLUMG00010002069	pseudogene	Chr3:146627883-146628152 (-)
PWK/PhJ	ENSLUMG00010002063	pseudogene	Chr3:151553137-151553406 (+)
PWK/PhJ	ENSLUMG00010050917	pseudogene	Chr6:118757188-118757457 (-)
PWK/PhJ	ENSLUMG00010045128	pseudogene	Chr7:120422904-120423173 (-)
PWK/PhJ	ENSLUMG00010053131	pseudogene	Chr3:87486594-87486863 (+)
PWK/PhJ	ENSLUMG00010013993	pseudogene	Chr7:111309468-111309737 (+)
PWK/PhJ	ENSLUMG00010015164	pseudogene	Chr15:18528994-18529263 (+)
PWK/PhJ	ENSLUMG00010052482	pseudogene	Chr14:42066376-42066645 (-)
PWK/PhJ	ENSLUMG00010017287	pseudogene	Chr1:179124030-179124299 (-)
PWK/PhJ	ENSLUMG00010008330	pseudogene	Chr10:68103639-68103908 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48238
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42

• Ensembl
  ENSMUSG00000113545 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113545	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000223351	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;