Gm48228 Gene Detail

Summary

• Symbol
  Gm48228
• Name
  predicted gene, 48228

• Feature Type
  lncRNA gene
• IDs
  MGI:6097631
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:62154454-62273916 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1242 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097631	lncRNA gene	Chr13:62154454-62273916 (-)
129S1/SvImJ	ENSMUSG00200017312	lncRNA gene	Chr13:58962643-58962834 (+)
A/J	ENSMUSG00195047291	lncRNA gene	Chr13:58432242-58432645 (-)
AKR/J	ENSMUSG00220045291	lncRNA gene	Chr13:57881283-57881686 (-)
BALB/cJ	ENSMUSG00180018919	lncRNA gene	Chr13:58891253-58891654 (-)
BALB/cJ	ENSMUSG00180019090	lncRNA gene	Chr13:58674294-58674697 (-)
C3H/HeJ	ENSMUSG00175045610	lncRNA gene	Chr13:58562145-58681682 (-)
C57BL/6NJ	ENSMUSG00215040372	lncRNA gene	Chr13:58564552-58684097 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042778	lncRNA gene	Chr13:59102916-59103319 (-)
CAST/EiJ	ENSTCUG00005041958	lncRNA gene	Chr13:59508010-59508413 (+)
CAST/EiJ	ENSTCUG00005012305	lncRNA gene	Chr13:62446752-62447155 (-)
CAST/EiJ	ENSTCUG00005041968	lncRNA gene	Chr13:58753456-58753857 (-)
CAST/EiJ	ENSTCUG00005041982	lncRNA gene	Chr13:58987668-58988069 (-)
CAST/EiJ	ENSTCUG00005042713	lncRNA gene	Chr13:59215945-59216348 (-)
CBA/J	ENSMUSG00210044791	lncRNA gene	Chr13:58761658-58881203 (-)
DBA/2J	ENSMUSG00185018813	lncRNA gene	Chr13:59610278-59729823 (-)
FVB/NJ	ENSMUSG00205046657	lncRNA gene	Chr13:58144776-58145179 (+)
JF1/MsJ	ENSUMUG00000038337	lncRNA gene	Chr13:59183397-59183798 (-)
JF1/MsJ	ENSUMUG00000043045	lncRNA gene	Chr13:58962593-58962996 (-)
JF1/MsJ	ENSUMUG00000043218	lncRNA gene	Chr13:59285909-59286310 (-)
JF1/MsJ	ENSUMUG00000038315	lncRNA gene	Chr13:59768932-59769335 (+)
JF1/MsJ	ENSUMUG00000043522	lncRNA gene	Chr13:58849993-58850396 (-)
LP/J	ENSMUSG00230035872	lncRNA gene	Chr13:68982182-69084125 (-)
NOD/ShiLtJ	ENSMUSG00190036121	lncRNA gene	Chr13:58547883-58649701 (-)
NOD/ShiLtJ	ENSMUSG00190041175	lncRNA gene	Chr13:58438236-58438639 (-)
NZO/HlLtJ	ENSMUSG00225047508	lncRNA gene	Chr13:62661556-62781083 (-)
PWK/PhJ	ENSLUMG00010025561	lncRNA gene	Chr13:57788593-57788996 (-)
PWK/PhJ	ENSLUMG00010024809	lncRNA gene	Chr13:58609606-58610009 (+)
PWK/PhJ	ENSLUMG00010024748	lncRNA gene	Chr13:58001908-58105450 (-)
SPRET/EiJ	ENSMSPG00010044747	lncRNA gene	Chr13:58448445-58448848 (-)
SPRET/EiJ	ENSMSPG00010044315	lncRNA gene	Chr13:58194854-58306332 (-)
WSB/EiJ	ENSIUOG00005023559	lncRNA gene	Chr13:60696500-60696903 (-)

Homology

• Gene Tree
  Gm48228
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000114036 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114036	Ensembl Gene Model | MGI Sequence Detail	119463	C57BL/6J
transcript	ENSMUST00000220886	Ensembl | MGI Sequence Detail	404	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;