Gm48219 Pseudogene Detail

Summary

• Symbol
  Gm48219
• Name
  predicted gene, 48219

• Feature Type
  pseudogene
• IDs
  MGI:6097616
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:66060340-66060573 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  36

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097616	pseudogene	Chr13:66060340-66060573 (+)
129S1/SvImJ	ENSMUSG00200014358	pseudogene	Chr13:61674208-61674441 (+)
129S1/SvImJ	ENSMUSG00200014343	pseudogene	Chr13:61651975-61652208 (-)
A/J	no annotation
AKR/J	ENSMUSG00220041842	pseudogene	Chr13:60896944-60897177 (-)
AKR/J	ENSMUSG00220036994	pseudogene	Chr13:60966591-60966824 (-)
BALB/cJ	ENSMUSG00180030116	pseudogene	Chr13:62115398-62115631 (-)
BALB/cJ	ENSMUSG00180027349	pseudogene	Chr13:62213110-62213343 (-)
C3H/HeJ	ENSMUSG00175009176	pseudogene	Chr13:62662898-62663131 (-)
C3H/HeJ	ENSMUSG00175008660	pseudogene	Chr13:62800548-62800783 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210009598	pseudogene	Chr13:62075754-62075985 (-)
DBA/2J	ENSMUSG00185010794	pseudogene	Chr13:65782882-65783117 (-)
DBA/2J	ENSMUSG00185009471	pseudogene	Chr13:63809841-63810074 (-)
DBA/2J	ENSMUSG00185010290	pseudogene	Chr13:63137356-63137589 (-)
DBA/2J	ENSMUSG00185010443	pseudogene	Chr13:64117718-64117949 (-)
DBA/2J	ENSMUSG00185010526	pseudogene	Chr13:64524351-64524584 (-)
FVB/NJ	ENSMUSG00205025957	pseudogene	Chr13:61365782-61366015 (-)
JF1/MsJ	ENSUMUG00000042688	pseudogene	Chr13:65332610-65332843 (-)
JF1/MsJ	ENSUMUG00000041395	pseudogene	Chr13:63882424-63882657 (+)
JF1/MsJ	ENSUMUG00000040736	pseudogene	Chr13:63264915-63265148 (+)
JF1/MsJ	ENSUMUG00000036064	pseudogene	Chr13:63131263-63131496 (+)
JF1/MsJ	ENSUMUG00000042025	pseudogene	Chr13:64635444-64635677 (-)
JF1/MsJ	ENSUMUG00000040616	pseudogene	Chr13:63017502-63017735 (-)
JF1/MsJ	ENSUMUG00000042248	pseudogene	Chr13:64759993-64760226 (+)
JF1/MsJ	ENSUMUG00000040770	pseudogene	Chr13:63346810-63347043 (+)
JF1/MsJ	ENSUMUG00000043754	pseudogene	Chr13:63754990-63755223 (+)
JF1/MsJ	ENSUMUG00000041468	pseudogene	Chr13:63964272-63964505 (+)
LP/J	ENSMUSG00230036831	pseudogene	Chr13:75366131-75366364 (+)
LP/J	ENSMUSG00230036751	pseudogene	Chr13:74909711-74909944 (+)
LP/J	ENSMUSG00230036616	pseudogene	Chr13:74091859-74092092 (-)
LP/J	ENSMUSG00230036298	pseudogene	Chr13:73141665-73141898 (-)
LP/J	ENSMUSG00230036253	pseudogene	Chr13:72733700-72733933 (+)
LP/J	ENSMUSG00230035162	pseudogene	Chr13:72381066-72381299 (-)
LP/J	ENSMUSG00230036080	pseudogene	Chr13:72311497-72311730 (-)
LP/J	ENSMUSG00230036177	pseudogene	Chr13:72554736-72554969 (-)
LP/J	ENSMUSG00230036285	pseudogene	Chr13:73075106-73075339 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024928	pseudogene	Chr13:61121167-61121396 (-)

Homology

• Gene Tree
  Gm48219
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38

• Ensembl
  ENSMUSG00000114013 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114013	Ensembl Gene Model | MGI Sequence Detail	234	C57BL/6J
transcript	ENSMUST00000221384	Ensembl | MGI Sequence Detail	234	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;