Gm48171 Pseudogene Detail

Summary

• Symbol
  Gm48171
• Name
  predicted gene, 48171

• Feature Type
  pseudogene
• IDs
  MGI:6097547
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65662001-65662792 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097547	pseudogene	Chr13:65662001-65662792 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180030158	pseudogene	Chr13:62321476-62322267 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215012107	pseudogene	Chr13:62005577-62006368 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210009818	pseudogene	Chr13:62079170-62079966 (-)
DBA/2J	ENSMUSG00185008845	pseudogene	Chr13:64981720-64982525 (+)
DBA/2J	ENSMUSG00185011110	pseudogene	Chr13:65326030-65326810 (-)
DBA/2J	ENSMUSG00185008841	pseudogene	Chr13:63952369-63953172 (+)
DBA/2J	ENSMUSG00185010678	pseudogene	Chr13:65163667-65164458 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000033805	pseudogene	Chr13:62732737-62733528 (+)
JF1/MsJ	ENSUMUG00000041988	pseudogene	Chr13:64612418-64613209 (+)
JF1/MsJ	ENSUMUG00000042341	pseudogene	Chr13:64858997-64859787 (+)
LP/J	ENSMUSG00230035821	pseudogene	Chr13:74230225-74231005 (+)
LP/J	ENSMUSG00230035784	pseudogene	Chr13:73963451-73964242 (-)
LP/J	ENSMUSG00230036590	pseudogene	Chr13:73926589-73927380 (-)
LP/J	ENSMUSG00230034947	pseudogene	Chr13:73716857-73717647 (+)
LP/J	ENSMUSG00230035472	pseudogene	Chr13:72756213-72757004 (-)
LP/J	ENSMUSG00230035599	pseudogene	Chr13:73275394-73276172 (+)
LP/J	ENSMUSG00230035694	pseudogene	Chr13:73645135-73645926 (-)
LP/J	ENSMUSG00230035971	pseudogene	Chr13:75474895-75475682 (-)
LP/J	ENSMUSG00230035861	pseudogene	Chr13:74412169-74531127 (-)
LP/J	ENSMUSG00230035938	pseudogene	Chr13:75018475-75019262 (-)
LP/J	ENSMUSG00230035805	pseudogene	Chr13:74061555-74062346 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225048757	pseudogene	Chr13:66715451-66716256 (-)
NZO/HlLtJ	ENSMUSG00225048124	pseudogene	Chr13:67392747-67393552 (+)
NZO/HlLtJ	ENSMUSG00225048874	pseudogene	Chr13:67574721-67575512 (-)
NZO/HlLtJ	ENSMUSG00225048718	pseudogene	Chr13:66597494-66598274 (+)
NZO/HlLtJ	ENSMUSG00225048681	pseudogene	Chr13:66404021-66404801 (+)
NZO/HlLtJ	ENSMUSG00225048664	pseudogene	Chr13:66289040-66289820 (-)
NZO/HlLtJ	ENSMUSG00225048844	pseudogene	Chr13:67075619-67076399 (+)
PWK/PhJ	ENSLUMG00010011983	pseudogene	Chr13:61466860-61467651 (-)
SPRET/EiJ	ENSMSPG00010033955	pseudogene	Chr13:61827206-61828011 (+)
WSB/EiJ	ENSIUOG00005025317	pseudogene	Chr13:61044983-61045788 (+)

Homology

• Gene Tree
  Gm48171
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000113008 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113008	Ensembl Gene Model | MGI Sequence Detail	792	C57BL/6J
transcript	ENSMUST00000220634	Ensembl | MGI Sequence Detail	327	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;