Gm48170 Gene Detail

Summary

• Symbol
  Gm48170
• Name
  predicted gene, 48170

• Feature Type
  lncRNA gene
• IDs
  MGI:6097545
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65757951-65768103 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097545	lncRNA gene	Chr13:65757951-65768103 (-)
129S1/SvImJ	ENSMUSG00200014078	lncRNA gene	Chr13:61779144-61782257 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215012750	lncRNA gene	Chr13:62107272-62111693 (-)
C57BL/6NJ	ENSMUSG00215012838	lncRNA gene	Chr13:62270556-62274767 (+)
C57BL/6NJ	ENSMUSG00215020148	lncRNA gene	Chr13:61971830-61975979 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014943	lncRNA gene	Chr13:10347891-10351182 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185010957	lncRNA gene	Chr13:63918854-63922987 (-)
DBA/2J	ENSMUSG00185011146	lncRNA gene	Chr13:65517007-65521144 (-)
DBA/2J	ENSMUSG00185010875	lncRNA gene	Chr13:63330456-63334604 (-)
DBA/2J	ENSMUSG00185010894	lncRNA gene	Chr13:63458507-63470725 (+)
DBA/2J	ENSMUSG00185009398	lncRNA gene	Chr13:64405986-64410131 (+)
DBA/2J	ENSMUSG00185010993	lncRNA gene	Chr13:64293296-64297445 (-)
DBA/2J	ENSMUSG00185011049	lncRNA gene	Chr13:64946206-64950334 (-)
DBA/2J	ENSMUSG00185011117	lncRNA gene	Chr13:65358637-65362776 (+)
DBA/2J	ENSMUSG00185011038	lncRNA gene	Chr13:64769136-64781340 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000044940	lncRNA gene	Chr13:64991312-64995523 (+)
JF1/MsJ	ENSUMUG00000043533	lncRNA gene	Chr13:63541442-63545586 (+)
JF1/MsJ	ENSUMUG00000032856	lncRNA gene	Chr13:62834460-62838880 (-)
JF1/MsJ	ENSUMUG00000044450	lncRNA gene	Chr13:64483320-64487533 (+)
JF1/MsJ	ENSUMUG00000044754	lncRNA gene	Chr13:64825429-64829666 (-)
JF1/MsJ	ENSUMUG00000044224	lncRNA gene	Chr13:64303198-64307347 (-)
JF1/MsJ	ENSUMUG00000042889	lncRNA gene	Chr13:62698985-62703134 (-)
JF1/MsJ	ENSUMUG00000043669	lncRNA gene	Chr13:63670070-63674216 (+)
JF1/MsJ	ENSUMUG00000042548	lncRNA gene	Chr13:65121893-65126034 (-)
JF1/MsJ	ENSUMUG00000042171	lncRNA gene	Chr13:64715259-64719405 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011863	lncRNA gene	Chr13:61538136-61542282 (+)
SPRET/EiJ	ENSMSPG00010034485	lncRNA gene	Chr13:62130685-62134857 (-)
SPRET/EiJ	ENSMSPG00010034458	lncRNA gene	Chr13:61636491-61640624 (-)
SPRET/EiJ	ENSMSPG00010034354	lncRNA gene	Chr13:61783642-61795849 (-)
WSB/EiJ	ENSIUOG00005025442	lncRNA gene	Chr13:61001497-61013711 (-)
WSB/EiJ	ENSIUOG00005024728	lncRNA gene	Chr13:60656664-60660812 (+)

Homology

• Gene Tree
  Gm48170
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44

• Ensembl
  ENSMUSG00000113135 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113135	Ensembl Gene Model | MGI Sequence Detail	10153	C57BL/6J
transcript	ENSMUST00000308200	Ensembl | MGI Sequence Detail	1455	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;