Gm48166 Gene Detail

Summary

• Symbol
  Gm48166
• Name
  predicted gene, 48166

• Feature Type
  lncRNA gene
• IDs
  MGI:6097539
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65641304-65778588 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  664 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097539	lncRNA gene	Chr13:65641304-65778588 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195028988	lncRNA gene	Chr13:61866454-61868114 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180029307	lncRNA gene	Chr13:62380509-62382169 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215014233	lncRNA gene	Chr13:61984628-62122225 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185009994	lncRNA gene	Chr13:63931646-63933307 (+)
DBA/2J	ENSMUSG00185011154	lncRNA gene	Chr13:65529909-65531571 (+)
DBA/2J	ENSMUSG00185010693	lncRNA gene	Chr13:65183630-65185292 (-)
DBA/2J	ENSMUSG00185009999	lncRNA gene	Chr13:64959064-64960728 (+)
DBA/2J	ENSMUSG00185010006	lncRNA gene	Chr13:65472366-65474026 (+)
DBA/2J	ENSMUSG00185009987	lncRNA gene	Chr13:65348415-65350075 (-)
DBA/2J	ENSMUSG00185010665	lncRNA gene	Chr13:65091006-65092666 (+)
DBA/2J	ENSMUSG00185009989	lncRNA gene	Chr13:65674289-65675949 (-)
DBA/2J	ENSMUSG00185009981	lncRNA gene	Chr13:64395635-64397299 (-)
DBA/2J	ENSMUSG00185009977	lncRNA gene	Chr13:63448212-63449872 (-)
FVB/NJ	ENSMUSG00205030322	lncRNA gene	Chr13:61434547-61436211 (-)
JF1/MsJ	ENSUMUG00000043341	lncRNA gene	Chr13:63316390-63318562 (+)
JF1/MsJ	ENSUMUG00000043195	lncRNA gene	Chr13:63045924-63048096 (-)
JF1/MsJ	ENSUMUG00000044807	lncRNA gene	Chr13:64838283-64839946 (+)
JF1/MsJ	ENSUMUG00000034837	lncRNA gene	Chr13:62711786-62849411 (+)
JF1/MsJ	ENSUMUG00000043622	lncRNA gene	Chr13:63659797-63661460 (-)
JF1/MsJ	ENSUMUG00000044263	lncRNA gene	Chr13:64315947-64317611 (+)
JF1/MsJ	ENSUMUG00000044576	lncRNA gene	Chr13:64589318-64590982 (+)
JF1/MsJ	ENSUMUG00000044693	lncRNA gene	Chr13:64728008-64729672 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190041834	lncRNA gene	Chr13:61961675-61963335 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013071	lncRNA gene	Chr13:61524613-61526277 (-)
SPRET/EiJ	ENSMSPG00010031638	lncRNA gene	Chr13:62144278-62145939 (+)
SPRET/EiJ	ENSMSPG00010031611	lncRNA gene	Chr13:61804551-61806214 (+)
WSB/EiJ	ENSIUOG00005024771	lncRNA gene	Chr13:61022328-61023992 (+)
WSB/EiJ	ENSIUOG00005024752	lncRNA gene	Chr13:60645604-60647264 (-)

Homology

• Gene Tree
  Gm48166
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000113618 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113618	Ensembl Gene Model | MGI Sequence Detail	137285	C57BL/6J
transcript	ENSMUST00000222230	Ensembl | MGI Sequence Detail	1660	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;