Gm48165 Pseudogene Detail

Summary

• Symbol
  Gm48165
• Name
  predicted gene, 48165

• Feature Type
  pseudogene
• IDs
  MGI:6097538
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65635622-65636270 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097538	pseudogene	Chr13:65635622-65636270 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195029004	pseudogene	Chr13:61872948-61885841 (-)
AKR/J	ENSMUSG00220040750	pseudogene	Chr13:60922958-60924926 (-)
BALB/cJ	ENSMUSG00180029273	pseudogene	Chr13:62280484-62388157 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215014249	pseudogene	Chr13:61978581-62115654 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015063	pseudogene	Chr13:10247157-10337287 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185011127	pseudogene	Chr13:65466370-65467526 (+)
DBA/2J	ENSMUSG00185009940	pseudogene	Chr13:63292655-63455912 (-)
DBA/2J	ENSMUSG00185010020	pseudogene	Chr13:64300044-64301212 (+)
DBA/2J	ENSMUSG00185010024	pseudogene	Chr13:65523734-65524889 (+)
DBA/2J	ENSMUSG00185009946	pseudogene	Chr13:64783937-65086164 (+)
DBA/2J	ENSMUSG00185010016	pseudogene	Chr13:63925598-63926766 (+)
DBA/2J	ENSMUSG00185010007	pseudogene	Chr13:65354882-65356041 (-)
FVB/NJ	ENSMUSG00205030371	pseudogene	Chr13:61422800-61423968 (-)
JF1/MsJ	ENSUMUG00000040990	pseudogene	Chr13:63666306-63667471 (-)
JF1/MsJ	ENSUMUG00000041969	pseudogene	Chr13:64583322-64584482 (+)
JF1/MsJ	ENSUMUG00000041618	pseudogene	Chr13:64309947-64311114 (+)
JF1/MsJ	ENSUMUG00000042312	pseudogene	Chr13:64832262-64833427 (+)
JF1/MsJ	ENSUMUG00000035032	pseudogene	Chr13:62705735-62842840 (+)
JF1/MsJ	ENSUMUG00000042217	pseudogene	Chr13:64722002-64723167 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190041872	pseudogene	Chr13:61968175-62026038 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013084	pseudogene	Chr13:61531136-61535538 (-)
SPRET/EiJ	ENSMSPG00010031672	pseudogene	Chr13:61798446-61799613 (+)
WSB/EiJ	ENSIUOG00005024784	pseudogene	Chr13:61016308-61017471 (+)

Homology

• Gene Tree
  Gm48165
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000113468 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113468	Ensembl Gene Model | MGI Sequence Detail	649	C57BL/6J
transcript	ENSMUST00000221770	Ensembl | MGI Sequence Detail	649	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;