Gm48161 Gene Detail

Summary

• Symbol
  Gm48161
• Name
  predicted gene, 48161

• Feature Type
  lncRNA gene
• IDs
  MGI:6097531
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:30554342-30561166 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  116

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097531	lncRNA gene	Chr13:30554342-30561166 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195019991	lncRNA gene	Chr17:67845992-67852814 (+)
A/J	ENSMUSG00195001823	lncRNA gene	Chr12:53691403-53698189 (-)
A/J	ENSMUSG00195008133	lncRNA gene	Chr1:110897672-110904511 (+)
A/J	ENSMUSG00195002695	lncRNA gene	Chr19:54323895-54330730 (+)
A/J	ENSMUSG00195026422	lncRNA gene	Chr13:71750534-71757406 (+)
A/J	ENSMUSG00195003678	lncRNA gene	Chr16:41061901-41066830 (+)
A/J	ENSMUSG00195019982	lncRNA gene	Chr17:62914012-62920834 (+)
A/J	ENSMUSG00195039357	lncRNA gene	ChrX:135749557-135754488 (+)
A/J	ENSMUSG00195023745	lncRNA gene	Chr10:86321079-86327918 (-)
A/J	ENSMUSG00195013742	lncRNA gene	Chr13:5105784-5110709 (-)
A/J	ENSMUSG00195038826	lncRNA gene	Chr13:26864237-26871061 (+)
AKR/J	ENSMUSG00220005018	lncRNA gene	Chr5:63233762-63240597 (-)
AKR/J	ENSMUSG00220015341	lncRNA gene	Chr10:116343305-116350144 (+)
AKR/J	ENSMUSG00220011802	lncRNA gene	Chr8:338297-345135 (+)
AKR/J	ENSMUSG00220035622	lncRNA gene	Chr8:13933814-13940636 (+)
AKR/J	ENSMUSG00220023583	lncRNA gene	Chr10:85879720-85886559 (-)
AKR/J	ENSMUSG00220019191	lncRNA gene	Chr17:70665139-70670085 (-)
AKR/J	ENSMUSG00220013206	lncRNA gene	Chr13:26719355-26726179 (+)
AKR/J	ENSMUSG00220000389	lncRNA gene	Chr1:105142144-105149019 (-)
AKR/J	ENSMUSG00220014831	lncRNA gene	Chr1:159281579-159288401 (+)
AKR/J	ENSMUSG00220052773	lncRNA gene	Chr3:80830441-80837277 (-)
BALB/cJ	ENSMUSG00180026541	lncRNA gene	Chr5:62876127-62882962 (-)
BALB/cJ	ENSMUSG00180010761	lncRNA gene	Chr13:5511423-5516348 (-)
BALB/cJ	ENSMUSG00180007770	lncRNA gene	Chr12:52707750-52714536 (-)
BALB/cJ	ENSMUSG00180050650	lncRNA gene	Chr3:81003125-81009961 (-)
BALB/cJ	ENSMUSG00180022503	lncRNA gene	Chr17:67582204-67589026 (+)
BALB/cJ	ENSMUSG00180022479	lncRNA gene	Chr17:62651393-62658215 (+)
BALB/cJ	ENSMUSG00180014731	lncRNA gene	Chr8:58870667-58877517 (-)
BALB/cJ	ENSMUSG00180022876	lncRNA gene	Chr13:27164366-27171190 (+)
BALB/cJ	ENSMUSG00180001232	lncRNA gene	Chr1:24983337-24990184 (+)
BALB/cJ	ENSMUSG00180000625	lncRNA gene	Chr1:111181098-111187937 (+)
BALB/cJ	ENSMUSG00180030051	lncRNA gene	Chr16:41268350-41273279 (+)
C3H/HeJ	ENSMUSG00175008723	lncRNA gene	Chr8:376905-383743 (+)
C3H/HeJ	ENSMUSG00175033444	lncRNA gene	Chr17:66895355-66902177 (+)
C3H/HeJ	ENSMUSG00175020196	lncRNA gene	Chr4:150495200-150500137 (-)
C3H/HeJ	ENSMUSG00175025463	lncRNA gene	Chr7:83950105-83956944 (-)
C3H/HeJ	ENSMUSG00175008315	lncRNA gene	Chr8:59095747-59102597 (-)
C3H/HeJ	ENSMUSG00175046448	lncRNA gene	Chr7:122367055-122373919 (+)
C3H/HeJ	ENSMUSG00175035981	lncRNA gene	Chr13:27186866-27193690 (+)
C3H/HeJ	ENSMUSG00175009070	lncRNA gene	Chr13:5553000-5557925 (-)
C3H/HeJ	ENSMUSG00175017937	lncRNA gene	Chr12:55744461-55751247 (-)
C3H/HeJ	ENSMUSG00175047022	lncRNA gene	Chr13:54562585-54569419 (+)
C3H/HeJ	ENSMUSG00175006055	lncRNA gene	Chr14:102655973-102662822 (-)
C57BL/6NJ	ENSMUSG00215008414	lncRNA gene	Chr1:105332154-105339029 (-)
C57BL/6NJ	ENSMUSG00215000735	lncRNA gene	Chr8:121065793-121070718 (-)
C57BL/6NJ	ENSMUSG00215042217	lncRNA gene	Chr1:159688707-159695529 (+)
C57BL/6NJ	ENSMUSG00215026870	lncRNA gene	Chr13:5796123-5801048 (-)
C57BL/6NJ	ENSMUSG00215012917	lncRNA gene	Chr13:27329700-27336524 (+)
C57BL/6NJ	ENSMUSG00215007859	lncRNA gene	Chr14:100836574-100843423 (-)
C57BL/6NJ	ENSMUSG00215028057	lncRNA gene	Chr16:35306749-35313570 (-)
C57BL/6NJ	ENSMUSG00215030938	lncRNA gene	Chr3:133037775-133044597 (+)
C57BL/6NJ	ENSMUSG00215040699	lncRNA gene	Chr4:116133310-116140132 (-)
C57BL/6NJ	ENSMUSG00215033607	lncRNA gene	Chr8:13908893-13915715 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210026120	lncRNA gene	Chr7:83802948-83809787 (-)
CBA/J	ENSMUSG00210023284	lncRNA gene	Chr13:5082121-5087046 (-)
CBA/J	ENSMUSG00210014530	lncRNA gene	Chr12:52215546-52222332 (-)
CBA/J	ENSMUSG00210050248	lncRNA gene	Chr15:74431978-74436959 (+)
CBA/J	ENSMUSG00210017454	lncRNA gene	Chr2:161590261-161597084 (+)
CBA/J	ENSMUSG00210011459	lncRNA gene	Chr8:254479-261317 (+)
CBA/J	ENSMUSG00210014174	lncRNA gene	Chr8:121397389-121402314 (-)
CBA/J	ENSMUSG00210028038	lncRNA gene	Chr14:113696495-113703358 (+)
CBA/J	ENSMUSG00210009721	lncRNA gene	Chr8:58976769-58983619 (-)
CBA/J	ENSMUSG00210028241	lncRNA gene	Chr13:27130471-27137295 (+)
CBA/J	ENSMUSG00210031478	lncRNA gene	Chr17:66707409-66714231 (+)
DBA/2J	ENSMUSG00185011277	lncRNA gene	Chr16:41448061-41452990 (+)
DBA/2J	ENSMUSG00185026177	lncRNA gene	Chr13:5770634-5775559 (-)
DBA/2J	ENSMUSG00185021665	lncRNA gene	Chr13:27949520-27956344 (+)
DBA/2J	ENSMUSG00185051154	lncRNA gene	Chr4:102810086-102816935 (-)
DBA/2J	ENSMUSG00185021688	lncRNA gene	Chr14:106780959-106787808 (-)
DBA/2J	ENSMUSG00185004258	lncRNA gene	Chr1:10730750-10737616 (+)
DBA/2J	ENSMUSG00185001728	lncRNA gene	Chr12:54160786-54167572 (-)
DBA/2J	ENSMUSG00185000819	lncRNA gene	Chr4:81693162-81695023 (-)
DBA/2J	ENSMUSG00185040654	lncRNA gene	Chr8:127716397-127721322 (-)
DBA/2J	ENSMUSG00185034807	lncRNA gene	Chr7:88129564-88136403 (-)
DBA/2J	ENSMUSG00185023900	lncRNA gene	Chr17:69540489-69547311 (+)
FVB/NJ	ENSMUSG00205041544	lncRNA gene	Chr8:120365017-120369942 (-)
FVB/NJ	ENSMUSG00205023833	lncRNA gene	Chr2:74321553-74328389 (+)
FVB/NJ	ENSMUSG00205024801	lncRNA gene	Chr10:85926021-85932860 (-)
FVB/NJ	ENSMUSG00205039474	lncRNA gene	Chr11:4338176-4345031 (-)
FVB/NJ	ENSMUSG00205030190	lncRNA gene	Chr13:26954163-26960988 (+)
FVB/NJ	ENSMUSG00205001353	lncRNA gene	Chr13:111644751-111649755 (+)
FVB/NJ	ENSMUSG00205006022	lncRNA gene	Chr8:324305-331142 (+)
FVB/NJ	ENSMUSG00205030278	lncRNA gene	Chr13:5531418-5536343 (-)
FVB/NJ	ENSMUSG00205000811	lncRNA gene	Chr12:82072053-82078919 (-)
FVB/NJ	ENSMUSG00205020471	lncRNA gene	Chr17:62377830-62384652 (+)
FVB/NJ	ENSMUSG00205013356	lncRNA gene	Chr1:158766712-158773534 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230021934	lncRNA gene	Chr13:37274175-37280999 (+)
LP/J	ENSMUSG00230016798	lncRNA gene	Chr8:39516090-39522885 (-)
LP/J	ENSMUSG00230010169	lncRNA gene	Chr6:137641588-137648410 (+)
LP/J	ENSMUSG00230045828	lncRNA gene	Chr7:94211153-94217992 (-)
LP/J	ENSMUSG00230042142	lncRNA gene	Chr17:45265738-45270717 (+)
LP/J	ENSMUSG00230008064	lncRNA gene	Chr8:68688350-68695200 (-)
LP/J	ENSMUSG00230007768	lncRNA gene	Chr8:131269587-131274512 (-)
LP/J	ENSMUSG00230024923	lncRNA gene	Chr12:32423722-32428680 (+)
LP/J	ENSMUSG00230014820	lncRNA gene	Chr1:77903855-77910677 (+)
LP/J	ENSMUSG00230018990	lncRNA gene	Chr4:85113453-85115314 (-)
NOD/ShiLtJ	ENSMUSG00190037856	lncRNA gene	Chr13:27324344-27331168 (+)
NOD/ShiLtJ	ENSMUSG00190012359	lncRNA gene	Chr8:364530-371368 (+)
NOD/ShiLtJ	ENSMUSG00190023442	lncRNA gene	Chr7:82303629-82310478 (+)
NOD/ShiLtJ	ENSMUSG00190048658	lncRNA gene	Chr2:160995096-161001919 (+)
NOD/ShiLtJ	ENSMUSG00190016813	lncRNA gene	Chr2:110094157-110099190 (+)
NOD/ShiLtJ	ENSMUSG00190038437	lncRNA gene	ChrX:132137404-132142335 (+)
NOD/ShiLtJ	ENSMUSG00190045807	lncRNA gene	Chr1:159527174-159533996 (+)
NOD/ShiLtJ	ENSMUSG00190020280	lncRNA gene	Chr10:86306135-86312974 (-)
NOD/ShiLtJ	ENSMUSG00190054328	lncRNA gene	Chr11:64773140-64779976 (-)
NOD/ShiLtJ	ENSMUSG00190042442	lncRNA gene	Chr17:61737777-61744599 (+)
NZO/HlLtJ	ENSMUSG00225001207	lncRNA gene	Chr1:50487318-50494168 (+)
NZO/HlLtJ	ENSMUSG00225017494	lncRNA gene	Chr4:125064172-125070994 (-)
NZO/HlLtJ	ENSMUSG00225028601	lncRNA gene	Chr13:77967374-77974246 (+)
NZO/HlLtJ	ENSMUSG00225033365	lncRNA gene	Chr4:111228664-111235513 (-)
NZO/HlLtJ	ENSMUSG00225022555	lncRNA gene	Chr10:92429535-92436374 (-)
NZO/HlLtJ	ENSMUSG00225021269	lncRNA gene	Chr8:134629037-134633962 (-)
NZO/HlLtJ	ENSMUSG00225029196	lncRNA gene	Chr17:76669881-76674827 (-)
NZO/HlLtJ	ENSMUSG00225000200	lncRNA gene	Chr1:147765737-147772559 (-)
NZO/HlLtJ	ENSMUSG00225035706	lncRNA gene	Chr13:31056956-31063780 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm48161
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  118

• Ensembl
  ENSMUSG00000113424 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113424	Ensembl Gene Model | MGI Sequence Detail	6825	C57BL/6J
transcript	ENSMUST00000222575	Ensembl | MGI Sequence Detail	1835	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;