Gm48147 Pseudogene Detail

Summary

• Symbol
  Gm48147
• Name
  predicted gene, 48147

• Feature Type
  pseudogene
• IDs
  MGI:6097515
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:99871187-99871537 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097515	pseudogene	Chr12:99871187-99871537 (+)
129S1/SvImJ	ENSMUSG00200017867	pseudogene	Chr12:91643993-91644343 (+)
A/J	ENSMUSG00195020816	pseudogene	Chr12:94206308-94206658 (+)
AKR/J	ENSMUSG00220018139	pseudogene	Chr12:92098232-92098582 (+)
BALB/cJ	ENSMUSG00180037926	pseudogene	Chr12:93357162-93357512 (+)
C3H/HeJ	ENSMUSG00175035071	pseudogene	Chr12:96019365-96019715 (+)
C57BL/6NJ	ENSMUSG00215040973	pseudogene	Chr12:92668384-92668734 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006283	pseudogene	Chr12:92301807-92302157 (+)
CBA/J	ENSMUSG00210015155	pseudogene	Chr12:93016097-93016447 (+)
DBA/2J	ENSMUSG00185046952	pseudogene	Chr12:94805513-94805863 (+)
FVB/NJ	ENSMUSG00205019050	pseudogene	Chr12:92178192-92178542 (+)
JF1/MsJ	ENSUMUG00000025538	pseudogene	Chr12:99528210-99528560 (+)
LP/J	ENSMUSG00230004981	pseudogene	Chr12:101909133-101909483 (+)
NOD/ShiLtJ	ENSMUSG00190005375	pseudogene	Chr12:93130675-93131025 (-)
NZO/HlLtJ	ENSMUSG00225034104	pseudogene	Chr12:103624445-103624795 (+)
PWK/PhJ	ENSLUMG00010014129	pseudogene	Chr12:93019112-93019462 (+)
SPRET/EiJ	ENSMSPG00010019607	pseudogene	Chr12:95439577-95439927 (+)
WSB/EiJ	ENSIUOG00005002213	pseudogene	Chr12:92004383-92004733 (+)

Homology

• Gene Tree
  Gm48147
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113223 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113223	Ensembl Gene Model | MGI Sequence Detail	351	C57BL/6J
transcript	ENSMUST00000221445	Ensembl | MGI Sequence Detail	351	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;