Gm48116 Gene Detail

Summary

• Symbol
  Gm48116
• Name
  predicted gene, 48116

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:6097471
  NCBI Gene: 115488202
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:61857326-61859081 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097471	lncRNA gene	Chr13:61838798-61859081 (+)
129S1/SvImJ	ENSMUSG00200017154	lncRNA gene	Chr13:59061290-59062105 (-)
A/J	ENSMUSG00195046313	lncRNA gene	Chr13:58536134-58537404 (+)
AKR/J	ENSMUSG00220045114	lncRNA gene	Chr13:57785476-57787158 (+)
BALB/cJ	ENSMUSG00180018240	lncRNA gene	Chr13:58892160-58893428 (+)
C3H/HeJ	ENSMUSG00175046453	lncRNA gene	Chr13:58259700-58261382 (+)
C57BL/6NJ	ENSMUSG00215040203	lncRNA gene	Chr13:58267416-58269098 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042310	lncRNA gene	Chr13:59506241-59507504 (-)
CAST/EiJ	ENSTCUG00005042327	lncRNA gene	Chr13:59103825-59105091 (+)
CBA/J	ENSMUSG00210043972	lncRNA gene	Chr13:58464554-58466236 (+)
DBA/2J	ENSMUSG00185017901	lncRNA gene	Chr13:59313165-59314847 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000041309	lncRNA gene	Chr13:59767163-59768426 (-)
LP/J	ENSMUSG00230036165	lncRNA gene	Chr13:68685073-68686758 (+)
NOD/ShiLtJ	ENSMUSG00190037753	lncRNA gene	Chr13:58650207-58651475 (+)
NZO/HlLtJ	ENSMUSG00225047605	lncRNA gene	Chr13:62363605-62365287 (+)
PWK/PhJ	ENSLUMG00010024981	lncRNA gene	Chr13:57789374-57790760 (+)
PWK/PhJ	ENSLUMG00010024972	lncRNA gene	Chr13:58607837-58609100 (-)
SPRET/EiJ	ENSMSPG00010043996	lncRNA gene	Chr13:57995553-57997232 (+)
WSB/EiJ	ENSIUOG00005023649	lncRNA gene	Chr13:60697409-60698677 (+)

Homology

• Gene Tree
  Gm48116
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000113471 (Evidence)
• NCBI Gene
  115488202

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113471	Ensembl Gene Model | MGI Sequence Detail	1756	C57BL/6J
transcript	ENSMUST00000220710	Ensembl | MGI Sequence Detail	792	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;