Gm48106 Pseudogene Detail

Summary

• Symbol
  Gm48106
• Name
  predicted gene, 48106

• Feature Type
  pseudogene
• IDs
  MGI:6097458
  NCBI Gene: 115487418
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:88485968-88494092 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097458	pseudogene	Chr10:88485968-88500101 (-)
129S1/SvImJ	ENSMUSG00200034619	pseudogene	Chr15:8676633-8677591 (-)
129S1/SvImJ	ENSMUSG00200031295	pseudogene	Chr10:84983942-84992066 (-)
A/J	ENSMUSG00195021846	pseudogene	Chr10:85433195-85434153 (-)
AKR/J	ENSMUSG00220022254	pseudogene	Chr10:85039686-85040644 (-)
BALB/cJ	ENSMUSG00180032956	pseudogene	Chr10:85436199-85437157 (-)
C3H/HeJ	ENSMUSG00175022664	pseudogene	Chr10:85326707-85327665 (-)
C57BL/6NJ	ENSMUSG00215033210	pseudogene	Chr10:84986559-84994683 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035286	pseudogene	Chr10:84711284-84712242 (-)
CBA/J	ENSMUSG00210038593	pseudogene	Chr10:85167156-85168114 (-)
DBA/2J	ENSMUSG00185043280	pseudogene	Chr10:85393107-85394065 (-)
FVB/NJ	ENSMUSG00205019854	pseudogene	Chr10:85014594-85015552 (-)
JF1/MsJ	ENSUMUG00000028927	pseudogene	Chr10:86730459-86731417 (-)
LP/J	ENSMUSG00230016557	pseudogene	Chr15:12169668-12170626 (-)
LP/J	ENSMUSG00230018361	pseudogene	Chr10:87279280-87280238 (-)
NOD/ShiLtJ	ENSMUSG00190010707	pseudogene	Chr15:8647563-8648521 (-)
NOD/ShiLtJ	ENSMUSG00190018132	pseudogene	Chr10:85418413-85419371 (-)
NZO/HlLtJ	ENSMUSG00225053699	pseudogene	Chr10:91541737-91542695 (-)
PWK/PhJ	ENSLUMG00010024216	pseudogene	Chr10:85019308-85020266 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005038819	pseudogene	Chr10:85110041-85118199 (-)

Homology

• Gene Tree
  Gm48106
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000112428 (Evidence)
• NCBI Gene
  115487418

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112428	Ensembl Gene Model | MGI Sequence Detail	8125	C57BL/6J
transcript	ENSMUST00000219185	Ensembl | MGI Sequence Detail	960	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;