Gm48102 Gene Detail

Summary

• Symbol
  Gm48102
• Name
  predicted gene, 48102

• Feature Type
  lncRNA gene
• IDs
  MGI:6097451
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:94430504-94443071 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  494 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097451	lncRNA gene	Chr13:94430504-94443071 (+)
129S1/SvImJ	ENSMUSG00200009042	lncRNA gene	Chr13:88932163-88939402 (+)
A/J	ENSMUSG00195024702	lncRNA gene	Chr13:89426800-89434003 (+)
AKR/J	ENSMUSG00220013953	lncRNA gene	Chr13:87888250-87895487 (+)
BALB/cJ	ENSMUSG00180016898	lncRNA gene	Chr13:89968576-89975815 (+)
C3H/HeJ	ENSMUSG00175023846	lncRNA gene	Chr13:90132390-90139627 (+)
C57BL/6NJ	ENSMUSG00215003036	lncRNA gene	Chr13:90030039-90037269 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009878	lncRNA gene	Chr13:89212503-89219688 (+)
CBA/J	ENSMUSG00210024479	lncRNA gene	Chr13:89454133-89461375 (+)
DBA/2J	ENSMUSG00185019677	lncRNA gene	Chr13:93114831-93122064 (+)
FVB/NJ	ENSMUSG00205008381	lncRNA gene	Chr13:88916091-88923330 (+)
JF1/MsJ	ENSUMUG00000030774	lncRNA gene	Chr13:92786861-92793903 (+)
LP/J	ENSMUSG00230038116	lncRNA gene	Chr13:103132801-103140034 (+)
NOD/ShiLtJ	ENSMUSG00190019551	lncRNA gene	Chr13:89812464-89819693 (+)
NZO/HlLtJ	ENSMUSG00225034429	lncRNA gene	Chr13:95646467-95653702 (+)
PWK/PhJ	ENSLUMG00010011777	lncRNA gene	Chr13:88904996-88912123 (+)
SPRET/EiJ	ENSMSPG00010006876	lncRNA gene	Chr13:90149670-90157101 (+)
WSB/EiJ	ENSIUOG00005032001	lncRNA gene	Chr13:88819189-88826462 (+)

Homology

• Gene Tree
  Gm48102
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000113494 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113494	Ensembl Gene Model | MGI Sequence Detail	12568	C57BL/6J
transcript	ENSMUST00000344210	Ensembl | MGI Sequence Detail	1240	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm48102:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120680	Chr13:94430550-94430560 (+)	51 bp
Tssr120681	Chr13:94431769-94431780 (+)	1,271 bp
Tssr120682	Chr13:94437962-94437991 (+)	7,473 bp