Gm48101 Pseudogene Detail

Summary

• Symbol
  Gm48101
• Name
  predicted gene, 48101

• Feature Type
  pseudogene
• IDs
  MGI:6097450
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:86394751-86394871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097450	pseudogene	Chr12:86394751-86394871 (+)
129S1/SvImJ	ENSMUSG00200051129	pseudogene	Chr12:78410049-78410169 (+)
A/J	ENSMUSG00195035601	pseudogene	Chr12:81029704-81029824 (+)
AKR/J	ENSMUSG00220049538	pseudogene	Chr12:78825654-78825774 (+)
BALB/cJ	ENSMUSG00180027270	pseudogene	Chr12:80067412-80067532 (+)
C3H/HeJ	ENSMUSG00175041184	pseudogene	Chr12:83160483-83160603 (+)
C57BL/6NJ	ENSMUSG00215046974	pseudogene	Chr12:79373875-79373995 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031919	pseudogene	Chr12:79343165-79343285 (+)
CBA/J	ENSMUSG00210046354	pseudogene	Chr12:79573604-79573724 (+)
DBA/2J	ENSMUSG00185003099	pseudogene	Chr12:81430892-81431012 (+)
FVB/NJ	ENSMUSG00205042827	pseudogene	Chr12:79242494-79242614 (+)
JF1/MsJ	ENSUMUG00000050017	pseudogene	Chr12:85424217-85424337 (+)
LP/J	ENSMUSG00230045687	pseudogene	Chr12:88493029-88493149 (+)
NOD/ShiLtJ	ENSMUSG00190047561	pseudogene	Chr12:78630629-78630749 (+)
NZO/HlLtJ	ENSMUSG00225052595	pseudogene	Chr12:90530181-90530301 (+)
PWK/PhJ	ENSLUMG00010030800	pseudogene	Chr12:79444379-79444499 (+)
SPRET/EiJ	ENSMSPG00010001206	pseudogene	Chr12:81259958-81260078 (+)
WSB/EiJ	ENSIUOG00005045732	pseudogene	Chr12:79295079-79295199 (+)

Homology

• Gene Tree
  Gm48101
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113230 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113230	Ensembl Gene Model | MGI Sequence Detail	121	C57BL/6J
transcript	ENSMUST00000221001	Ensembl | MGI Sequence Detail	121	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;