Gm48098 Pseudogene Detail

Summary

• Symbol
  Gm48098
• Name
  predicted gene, 48098

• Feature Type
  pseudogene
• IDs
  MGI:6097446
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:3206208-3206489 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097446	pseudogene	Chr14:3206208-3206489 (-)
129S1/SvImJ	ENSMUSG00200010148	pseudogene	Chr10:39495457-39495573 (+)
129S1/SvImJ	ENSMUSG00200038935	pseudogene	ChrX:76203800-76204081 (-)
129S1/SvImJ	ENSMUSG00200009795	pseudogene	Chr13:84862245-84862402 (-)
129S1/SvImJ	ENSMUSG00200026059	pseudogene	Chr18:8810969-8811251 (-)
129S1/SvImJ	ENSMUSG00200003138	pseudogene	Chr5:855118-855275 (-)
129S1/SvImJ	ENSMUSG00200025471	pseudogene	Chr14:105863863-105864144 (+)
A/J	ENSMUSG00195030594	pseudogene	Chr14:703293-703574 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180024469	pseudogene	Chr14:144691-144972 (-)
C3H/HeJ	ENSMUSG00175009550	pseudogene	Chr14:136617-136898 (-)
C57BL/6NJ	ENSMUSG00215021972	pseudogene	Chr14:239144-239425 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031363	pseudogene	Chr14:6709-6990 (-)
CBA/J	ENSMUSG00210036096	pseudogene	Chr14:227393-227674 (-)
DBA/2J	ENSMUSG00185037295	pseudogene	Chr14:232749-233030 (-)
FVB/NJ	ENSMUSG00205028036	pseudogene	Chr14:184758-185039 (-)
JF1/MsJ	ENSUMUG00000026418	pseudogene	Chr14:235454-235735 (-)
LP/J	ENSMUSG00230006831	pseudogene	Chr14:1362419-1362700 (-)
NOD/ShiLtJ	ENSMUSG00190033697	pseudogene	Chr14:224254-224535 (-)
NZO/HlLtJ	ENSMUSG00225037088	pseudogene	Chr14:659305-659586 (-)
PWK/PhJ	ENSLUMG00010033842	pseudogene	Chr14:21527148-21527429 (-)
SPRET/EiJ	ENSMSPG00010012278	pseudogene	Chr14:109317155-109317435 (+)
SPRET/EiJ	ENSMSPG00010013858	pseudogene	Chr10:40641157-40641345 (+)
SPRET/EiJ	ENSMSPG00010016454	pseudogene	Chr12:49364985-49365266 (+)
SPRET/EiJ	ENSMSPG00010018568	pseudogene	Chr19:12650294-12650575 (+)
SPRET/EiJ	ENSMSPG00010047543	pseudogene	Chr2:26684859-26685140 (-)
SPRET/EiJ	ENSMSPG00010025689	pseudogene	Chr3:28526967-28527248 (+)
SPRET/EiJ	ENSMSPG00010015882	pseudogene	Chr4:89544131-89544412 (+)
SPRET/EiJ	ENSMSPG00010051130	pseudogene	Chr7:17515164-17515445 (-)
SPRET/EiJ	ENSMSPG00010034891	pseudogene	ChrX:79627905-79628186 (-)
SPRET/EiJ	ENSMSPG00010016461	pseudogene	Chr12:49388225-49388505 (-)
SPRET/EiJ	ENSMSPG00010027404	pseudogene	Chr13:4257293-4257568 (-)
SPRET/EiJ	ENSMSPG00010022274	pseudogene	ChrX:98961097-98961378 (+)
SPRET/EiJ	ENSMSPG00010051710	pseudogene	Chr19:5967379-5967654 (-)
SPRET/EiJ	ENSMSPG00010038415	pseudogene	Chr1:180392128-180392401 (-)
WSB/EiJ	ENSIUOG00005025134	pseudogene	Chr14:58207-58488 (-)

Homology

• Gene Tree
  Gm48098
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00000114906 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114906	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000223602	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;