Gm48045 Gene Detail

Summary

• Symbol
  Gm48045
• Name
  predicted gene, 48045

• Feature Type
  lncRNA gene
• IDs
  MGI:6097362
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:33894811-33896758 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097362	lncRNA gene	Chr10:33894811-33896758 (+)
129S1/SvImJ	ENSMUSG00200009944	lncRNA gene	Chr10:30739590-30741537 (+)
A/J	ENSMUSG00195017261	lncRNA gene	Chr10:31015702-31017649 (+)
AKR/J	ENSMUSG00220028797	lncRNA gene	Chr10:30712929-30714876 (+)
BALB/cJ	ENSMUSG00180016539	lncRNA gene	Chr10:31135732-31137679 (+)
C3H/HeJ	ENSMUSG00175012522	lncRNA gene	Chr10:30890735-30892682 (+)
C57BL/6NJ	ENSMUSG00215011577	lncRNA gene	Chr10:30680388-30682335 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029780	lncRNA gene	Chr10:31128672-31130604 (+)
CBA/J	ENSMUSG00210026234	lncRNA gene	Chr10:30818117-30820064 (+)
DBA/2J	ENSMUSG00185008367	lncRNA gene	Chr10:30970939-30972886 (+)
FVB/NJ	ENSMUSG00205015344	lncRNA gene	Chr10:30951746-30953694 (+)
JF1/MsJ	ENSUMUG00000038878	lncRNA gene	Chr10:30735646-30737586 (+)
LP/J	ENSMUSG00230015578	lncRNA gene	Chr10:32736508-32738455 (+)
NOD/ShiLtJ	ENSMUSG00190036574	lncRNA gene	Chr10:31083951-31085898 (+)
NZO/HlLtJ	ENSMUSG00225034059	lncRNA gene	Chr10:36994864-36996811 (+)
PWK/PhJ	ENSLUMG00010008352	lncRNA gene	Chr10:30755923-30757867 (+)
SPRET/EiJ	ENSMSPG00010020671	lncRNA gene	Chr10:31690951-31692905 (+)
WSB/EiJ	ENSIUOG00005015311	lncRNA gene	Chr10:30518265-30520212 (+)

Homology

• Gene Tree
  Gm48045
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111905 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111905	Ensembl Gene Model | MGI Sequence Detail	1948	C57BL/6J
transcript	ENSMUST00000218530	Ensembl | MGI Sequence Detail	1948	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;