Gm48036 Gene Detail

Summary

• Symbol
  Gm48036
• Name
  predicted gene, 48036

• Feature Type
  lncRNA gene
• IDs
  MGI:6097351
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:70705827-70708250 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097351	lncRNA gene	Chr10:70705827-70708250 (-)
129S1/SvImJ	ENSMUSG00200017845	lncRNA gene	Chr10:67400438-67402861 (-)
A/J	ENSMUSG00195005883	lncRNA gene	Chr10:67697765-67700188 (-)
AKR/J	ENSMUSG00220028635	lncRNA gene	Chr10:67366529-67368952 (-)
BALB/cJ	ENSMUSG00180007798	lncRNA gene	Chr10:67732209-67734632 (-)
C3H/HeJ	ENSMUSG00175012872	lncRNA gene	Chr10:67580730-67583161 (-)
C57BL/6NJ	ENSMUSG00215004082	lncRNA gene	Chr10:67341592-67344015 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027950	lncRNA gene	Chr10:67295904-67298314 (-)
CBA/J	ENSMUSG00210009771	lncRNA gene	Chr10:67455377-67457808 (-)
DBA/2J	ENSMUSG00185020798	lncRNA gene	Chr10:67802654-67805077 (-)
FVB/NJ	ENSMUSG00205008071	lncRNA gene	Chr10:67542039-67544462 (-)
JF1/MsJ	ENSUMUG00000021714	lncRNA gene	Chr10:68978141-68980536 (-)
LP/J	ENSMUSG00230020110	lncRNA gene	Chr10:69572643-69575066 (-)
NOD/ShiLtJ	ENSMUSG00190008026	lncRNA gene	Chr10:67801445-67803868 (-)
NZO/HlLtJ	ENSMUSG00225047774	lncRNA gene	Chr10:73868832-73871255 (-)
PWK/PhJ	ENSLUMG00010008038	lncRNA gene	Chr10:67402230-67404625 (-)
SPRET/EiJ	ENSMSPG00010023527	lncRNA gene	Chr10:69092621-69095017 (-)
WSB/EiJ	ENSIUOG00005033470	lncRNA gene	Chr10:67311559-67313982 (-)

Homology

• Gene Tree
  Gm48036
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112032	Ensembl Gene Model | MGI Sequence Detail	2424	C57BL/6J
transcript	ENSMUST00000217867	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;