Gm48031 Pseudogene Detail

Summary

• Symbol
  Gm48031
• Name
  predicted gene, 48031

• Feature Type
  pseudogene
• IDs
  MGI:6097346
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:22716702-22716845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097346	pseudogene	Chr12:22716702-22716845 (+)
129S1/SvImJ	ENSMUSG00200023196	pseudogene	Chr12:15359727-15359728 (-)
A/J	ENSMUSG00195018871	pseudogene	Chr12:17390647-17390789 (+)
AKR/J	ENSMUSG00220029801	pseudogene	Chr12:16783410-16783552 (-)
BALB/cJ	ENSMUSG00180009538	pseudogene	Chr12:16528234-16528377 (+)
C3H/HeJ	ENSMUSG00175005951	pseudogene	Chr12:15052245-15052250 (-)
C57BL/6NJ	ENSMUSG00215005596	pseudogene	Chr12:15165859-15166002 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006114	pseudogene	Chr12:15551334-15551339 (+)
CBA/J	ENSMUSG00210007850	pseudogene	Chr12:16072088-16072093 (-)
DBA/2J	ENSMUSG00185004548	pseudogene	Chr12:16765060-16765203 (+)
DBA/2J	ENSMUSG00185004572	pseudogene	Chr12:18096881-18097024 (+)
DBA/2J	ENSMUSG00185003895	pseudogene	Chr12:19032153-19032296 (+)
FVB/NJ	ENSMUSG00205001996	pseudogene	Chr12:16979521-16979526 (+)
JF1/MsJ	ENSUMUG00000012254	pseudogene	Chr12:16514691-16514833 (-)
JF1/MsJ	ENSUMUG00000008465	pseudogene	Chr12:20975002-20975145 (+)
JF1/MsJ	ENSUMUG00000012328	pseudogene	Chr12:17096499-17096642 (-)
JF1/MsJ	ENSUMUG00000008787	pseudogene	Chr12:22801844-22801987 (+)
JF1/MsJ	ENSUMUG00000006925	pseudogene	Chr12:23271312-23271455 (+)
JF1/MsJ	ENSUMUG00000008618	pseudogene	Chr12:21638995-21639138 (+)
LP/J	ENSMUSG00230008419	pseudogene	Chr12:25063473-25063616 (+)
LP/J	ENSMUSG00230008338	pseudogene	Chr12:22907177-22907320 (-)
LP/J	ENSMUSG00230008321	pseudogene	Chr12:22421604-22421747 (-)
LP/J	ENSMUSG00230008300	pseudogene	Chr12:21904682-21904825 (+)
LP/J	ENSMUSG00230008268	pseudogene	Chr12:21047875-21048017 (+)
LP/J	ENSMUSG00230007672	pseudogene	Chr12:25998732-25998875 (+)
NOD/ShiLtJ	ENSMUSG00190014485	pseudogene	Chr12:16259064-16259069 (-)
NZO/HlLtJ	ENSMUSG00225035744	pseudogene	Chr12:24857535-24857678 (-)
NZO/HlLtJ	ENSMUSG00225035713	pseudogene	Chr12:24107223-24107366 (+)
NZO/HlLtJ	ENSMUSG00225035633	pseudogene	Chr12:23250437-23250579 (+)
NZO/HlLtJ	ENSMUSG00225035053	pseudogene	Chr12:28181814-28181957 (+)
NZO/HlLtJ	ENSMUSG00225035837	pseudogene	Chr12:27246552-27246695 (+)
NZO/HlLtJ	ENSMUSG00225035731	pseudogene	Chr12:24371965-24372108 (-)
PWK/PhJ	ENSLUMG00010004889	pseudogene	Chr12:17617599-17617742 (+)
SPRET/EiJ	ENSMSPG00010002966	pseudogene	Chr12:16309688-16309693 (-)
WSB/EiJ	ENSIUOG00005001834	pseudogene	Chr12:15660123-15660128 (+)

Homology

• Gene Tree
  Gm48031
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00000114107 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114107	Ensembl Gene Model | MGI Sequence Detail	144	C57BL/6J
transcript	ENSMUST00000220556	Ensembl | MGI Sequence Detail	144	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;