Gm48018 Pseudogene Detail

Summary

• Symbol
  Gm48018
• Name
  predicted gene, 48018

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6097327
  NCBI Gene: 118567835
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:33805173-33851747 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1485 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097327	pseudogene	Chr10:33804573-33853159 (+)
129S1/SvImJ	ENSMUSG00200010128	pseudogene	Chr10:30690756-30697462 (+)
A/J	ENSMUSG00195017552	pseudogene	Chr10:30966869-30973575 (+)
AKR/J	ENSMUSG00220028469	pseudogene	Chr10:30664093-30670799 (+)
BALB/cJ	ENSMUSG00180017733	pseudogene	Chr10:31086896-31093602 (+)
C3H/HeJ	ENSMUSG00175011969	pseudogene	Chr10:30841901-30848607 (+)
C57BL/6NJ	ENSMUSG00215009774	pseudogene	Chr10:30631555-30638262 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028926	pseudogene	Chr10:31080007-31086736 (+)
CBA/J	ENSMUSG00210025754	pseudogene	Chr10:30769286-30775992 (+)
DBA/2J	ENSMUSG00185007734	pseudogene	Chr10:30922106-30928812 (+)
FVB/NJ	ENSMUSG00205013435	pseudogene	Chr10:30902914-30909620 (+)
JF1/MsJ	ENSUMUG00000038810	pseudogene	Chr10:30679038-30693630 (+)
LP/J	ENSMUSG00230015502	pseudogene	Chr10:32687674-32694380 (+)
NOD/ShiLtJ	ENSMUSG00190035592	pseudogene	Chr10:31035119-31041825 (+)
NZO/HlLtJ	ENSMUSG00225033942	pseudogene	Chr10:36946032-36952738 (+)
PWK/PhJ	ENSLUMG00010007901	pseudogene	Chr10:30697115-30714471 (+)
SPRET/EiJ	ENSMSPG00010020619	pseudogene	Chr10:31641374-31648720 (+)
WSB/EiJ	ENSIUOG00005015170	pseudogene	Chr10:30469432-30476138 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000111993 (Evidence), ENSMUSG00000121326 (Evidence)
• NCBI Gene
  118567835

Representative Sequences			Length	Strain/Species
genomic	118567835	NCBI Gene Model | MGI Sequence Detail	46575	C57BL/6J
transcript	XR_004936492	RefSeq | MGI Sequence Detail	336	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;