Gm48017 Pseudogene Detail

Summary

• Symbol
  Gm48017
• Name
  predicted gene, 48017

• Feature Type
  pseudogene
• IDs
  MGI:6097326
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:14215977-14216184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097326	pseudogene	Chr13:14215977-14216184 (+)
129S1/SvImJ	ENSMUSG00200014872	pseudogene	Chr13:11435953-11436160 (+)
A/J	ENSMUSG00195042150	pseudogene	Chr13:10511859-10512066 (+)
AKR/J	ENSMUSG00220035141	pseudogene	Chr13:10524482-10524689 (+)
BALB/cJ	ENSMUSG00180036875	pseudogene	Chr13:10860926-10861133 (+)
C3H/HeJ	ENSMUSG00175036730	pseudogene	Chr13:10962283-10962490 (+)
C57BL/6NJ	ENSMUSG00215037420	pseudogene	Chr13:10970664-10970871 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014098	pseudogene	Chr13:11099980-11100187 (+)
CBA/J	ENSMUSG00210030902	pseudogene	Chr13:10827878-10828085 (+)
DBA/2J	ENSMUSG00185013958	pseudogene	Chr13:11522591-11522798 (+)
FVB/NJ	ENSMUSG00205051877	pseudogene	Chr13:10762931-10763140 (+)
JF1/MsJ	ENSUMUG00000020825	pseudogene	Chr13:11352997-11353204 (+)
LP/J	ENSMUSG00230037060	pseudogene	Chr13:20931600-20931807 (+)
NOD/ShiLtJ	ENSMUSG00190024209	pseudogene	Chr13:10832942-10833149 (+)
NZO/HlLtJ	ENSMUSG00225032690	pseudogene	Chr13:14697813-14698020 (+)
PWK/PhJ	ENSLUMG00010032258	pseudogene	Chr13:10306142-10306349 (+)
SPRET/EiJ	ENSMSPG00010026474	pseudogene	Chr13:9956960-9957207 (+)
WSB/EiJ	ENSIUOG00005036674	pseudogene	Chr13:10187062-10187269 (+)

Homology

• Gene Tree
  Gm48017
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113819 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113819	Ensembl Gene Model | MGI Sequence Detail	208	C57BL/6J
transcript	ENSMUST00000220914	Ensembl | MGI Sequence Detail	208	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;