Gm48009 Pseudogene Detail

Summary

• Symbol
  Gm48009
• Name
  predicted gene, 48009

• Feature Type
  pseudogene
• IDs
  MGI:6097315
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:50044459-50046904 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097315	pseudogene	Chr13:50044459-50046904 (-)
129S1/SvImJ	ENSMUSG00200036401	pseudogene	Chr13:47324159-47326604 (-)
A/J	ENSMUSG00195032062	pseudogene	Chr13:47333693-47336138 (+)
A/J	ENSMUSG00195029762	pseudogene	Chr13:46373908-46376353 (-)
AKR/J	ENSMUSG00220009725	pseudogene	Chr13:46190176-46192621 (-)
BALB/cJ	ENSMUSG00180009334	pseudogene	Chr13:46676180-46678625 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034114	pseudogene	Chr13:46705777-46708222 (-)
CAST/EiJ	ENSTCUG00005034360	pseudogene	Chr13:46829048-46831490 (-)
CAST/EiJ	ENSTCUG00005034435	pseudogene	Chr13:47783579-47786024 (+)
CBA/J	ENSMUSG00210028322	pseudogene	Chr13:46651935-46654380 (-)
DBA/2J	ENSMUSG00185033414	pseudogene	Chr13:47465963-47468408 (-)
DBA/2J	ENSMUSG00185034406	pseudogene	Chr13:48425685-48428130 (+)
FVB/NJ	ENSMUSG00205013445	pseudogene	Chr13:46441236-46443681 (-)
JF1/MsJ	ENSUMUG00000020513	pseudogene	Chr13:47827463-47829908 (+)
JF1/MsJ	ENSUMUG00000017440	pseudogene	Chr13:47000031-47002476 (-)
LP/J	ENSMUSG00230029219	pseudogene	Chr13:56786736-56789181 (-)
LP/J	ENSMUSG00230031188	pseudogene	Chr13:57746433-57748878 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225036523	pseudogene	Chr13:50537152-50539597 (-)
NZO/HlLtJ	ENSMUSG00225035647	pseudogene	Chr13:51496866-51499311 (+)
PWK/PhJ	ENSLUMG00010022902	pseudogene	Chr13:46684153-46686598 (+)
PWK/PhJ	ENSLUMG00010022363	pseudogene	Chr13:45850312-45852757 (-)
SPRET/EiJ	ENSMSPG00010030625	pseudogene	Chr13:45974195-45976961 (-)
WSB/EiJ	ENSIUOG00005028524	pseudogene	Chr13:46011282-46013727 (-)

Homology

• Gene Tree
  Gm48009
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000113782 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113782	Ensembl Gene Model | MGI Sequence Detail	2446	C57BL/6J
transcript	ENSMUST00000222307	Ensembl | MGI Sequence Detail	2446	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;