Gm47969 Gene Detail

Summary

• Symbol
  Gm47969
• Name
  predicted gene, 47969

• Feature Type
  protein coding gene
• IDs
  MGI:6097249
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:83022653-83023667 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097249	protein coding gene	Chr1:83022653-83023667 (+)
129S1/SvImJ	ENSMUSG00200033802	protein coding gene	Chr1:80696753-80697767 (+)
A/J	ENSMUSG00195008679	protein coding gene	Chr1:80099268-80100282 (+)
AKR/J	ENSMUSG00220010078	protein coding gene	Chr1:80282817-80283818 (+)
BALB/cJ	ENSMUSG00180016048	protein coding gene	Chr1:80370971-80371985 (+)
C3H/HeJ	ENSMUSG00175015540	protein coding gene	Chr1:80505418-80506432 (+)
C57BL/6NJ	ENSMUSG00215009136	protein coding gene	Chr1:80419126-80420140 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210038532	protein coding gene	Chr1:80280293-80281294 (+)
DBA/2J	ENSMUSG00185028515	protein coding gene	Chr1:81327780-81328794 (+)
FVB/NJ	ENSMUSG00205026051	protein coding gene	Chr1:79843750-79844764 (+)
JF1/MsJ	ENSUMUG00000002954	protein coding gene	Chr1:80143738-80144759 (+)
LP/J	ENSMUSG00230010240	protein coding gene	Chr1:81263928-81264942 (+)
NOD/ShiLtJ	ENSMUSG00190026738	protein coding gene	Chr1:80483847-80484848 (+)
NZO/HlLtJ	ENSMUSG00225004246	protein coding gene	Chr1:84509272-84510286 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010045643	protein coding gene	Chr1:81893053-81894057 (+)
WSB/EiJ	ENSIUOG00005012990	protein coding gene	Chr1:80064616-80065630 (+)

Homology

• Gene Tree
  Gm47969
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• UniProt
  1

• Ensembl
  ENSMUSG00000113267 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113267	Ensembl Gene Model | MGI Sequence Detail	1015	C57BL/6J
transcript	ENSMUST00000222567	Ensembl | MGI Sequence Detail	1015	Not Applicable
polypeptide	ENSMUSP00000152431	Ensembl | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR063164 Small cysteine and glycine repeat-containing protein

References

• Summaries
  All 2
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;