Gm47966 Gene Detail

Summary

• Symbol
  Gm47966
• Name
  predicted gene, 47966

• Feature Type
  lncRNA gene
• IDs
  MGI:6097245
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:126500046-126555318 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1649 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097245	lncRNA gene	Chr10:126500046-126555318 (-)
129S1/SvImJ	ENSMUSG00200013775	lncRNA gene	Chr10:122899719-122905106 (-)
A/J	ENSMUSG00195017903	lncRNA gene	Chr10:123366502-123372013 (-)
AKR/J	ENSMUSG00220006310	lncRNA gene	Chr10:122968300-122973689 (-)
BALB/cJ	ENSMUSG00180011670	lncRNA gene	Chr10:123357602-123363113 (-)
C3H/HeJ	ENSMUSG00175006300	lncRNA gene	Chr10:123353014-123358410 (-)
C57BL/6NJ	ENSMUSG00215021154	lncRNA gene	Chr10:122967451-122972842 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041952	lncRNA gene	Chr10:122322928-122328347 (-)
CBA/J	ENSMUSG00210009407	lncRNA gene	Chr10:123177169-123182565 (-)
DBA/2J	ENSMUSG00185027914	lncRNA gene	Chr10:123325660-123331314 (-)
FVB/NJ	ENSMUSG00205026698	lncRNA gene	Chr10:122583296-122588687 (-)
JF1/MsJ	ENSUMUG00000047540	lncRNA gene	Chr10:124626736-124632142 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016106	lncRNA gene	Chr10:123405852-123411241 (-)
NZO/HlLtJ	ENSMUSG00225037908	lncRNA gene	Chr10:129447658-129453047 (-)
PWK/PhJ	ENSLUMG00010010419	lncRNA gene	Chr10:123075091-123080497 (-)
SPRET/EiJ	ENSMSPG00010036834	lncRNA gene	Chr10:125027048-125036235 (-)
WSB/EiJ	ENSIUOG00005008886	lncRNA gene	Chr10:122964184-122969580 (-)

Homology

• Gene Tree
  Gm47966
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000111961 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111961	Ensembl Gene Model | MGI Sequence Detail	55273	C57BL/6J
transcript	ENSMUST00000292808	Ensembl | MGI Sequence Detail	1533	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47966:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr99696	Chr10:126528394-126528408 (-)	26,917 bp