Gm47959 Gene Detail

Summary

• Symbol
  Gm47959
• Name
  predicted gene, 47959

• Feature Type
  protein coding gene
• IDs
  MGI:6097234
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:82978269-82979201 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097234	protein coding gene	Chr1:82978269-82979201 (+)
129S1/SvImJ	ENSMUSG00200032944	protein coding gene	Chr1:80652328-80653260 (+)
A/J	ENSMUSG00195008721	protein coding gene	Chr1:80054840-80055772 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180015649	protein coding gene	Chr1:80326547-80327479 (+)
C3H/HeJ	ENSMUSG00175016584	protein coding gene	Chr1:80460999-80461931 (+)
C57BL/6NJ	ENSMUSG00215021449	protein coding gene	Chr1:80374698-80375630 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185031997	protein coding gene	Chr1:81283354-81284286 (+)
FVB/NJ	ENSMUSG00205025891	protein coding gene	Chr1:79799317-79800276 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230009071	protein coding gene	Chr1:81219508-81220440 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225002727	protein coding gene	Chr1:84464847-84465779 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010045519	protein coding gene	Chr1:81855729-81856343 (+)
WSB/EiJ	ENSIUOG00005012856	protein coding gene	Chr1:80020283-80021161 (+)

Homology

• Gene Tree
  Gm47959
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• UniProt
  1

• Ensembl
  ENSMUSG00000113097 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113097	Ensembl Gene Model | MGI Sequence Detail	933	C57BL/6J
transcript	ENSMUST00000223439	Ensembl | MGI Sequence Detail	933	Not Applicable
polypeptide	ENSMUSP00000152237	Ensembl | MGI Sequence Detail	166	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 2
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;