Gm47958 Gene Detail

Summary

• Symbol
  Gm47958
• Name
  predicted gene, 47958

• Feature Type
  lncRNA gene
• IDs
  MGI:6097232
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:117999890-118001067 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097232	lncRNA gene	Chr10:117999890-118001067 (-)
129S1/SvImJ	ENSMUSG00200027510	lncRNA gene	Chr10:114392955-114394136 (-)
A/J	ENSMUSG00195023261	lncRNA gene	Chr10:114854798-114855979 (-)
AKR/J	ENSMUSG00220015278	lncRNA gene	Chr10:114419213-114420394 (-)
BALB/cJ	ENSMUSG00180017045	lncRNA gene	Chr10:114871637-114872818 (-)
C3H/HeJ	ENSMUSG00175026219	lncRNA gene	Chr10:114797700-114798881 (-)
C57BL/6NJ	ENSMUSG00215024113	lncRNA gene	Chr10:114503415-114504592 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034649	lncRNA gene	Chr10:113790282-113791454 (-)
CBA/J	ENSMUSG00210021751	lncRNA gene	Chr10:114647323-114648504 (-)
DBA/2J	ENSMUSG00185009404	lncRNA gene	Chr10:114789453-114790634 (-)
FVB/NJ	ENSMUSG00205030702	lncRNA gene	Chr10:114106092-114107269 (-)
JF1/MsJ	ENSUMUG00000027656	lncRNA gene	Chr10:116057676-116058857 (-)
LP/J	ENSMUSG00230025750	lncRNA gene	Chr10:116720281-116721462 (-)
NOD/ShiLtJ	ENSMUSG00190019430	lncRNA gene	Chr10:114916112-114917293 (-)
NZO/HlLtJ	ENSMUSG00225018925	lncRNA gene	Chr10:120963233-120964410 (-)
PWK/PhJ	ENSLUMG00010014012	lncRNA gene	Chr10:114446573-114447754 (-)
SPRET/EiJ	ENSMSPG00010016988	lncRNA gene	Chr10:116260432-116261604 (-)
WSB/EiJ	ENSIUOG00005014798	lncRNA gene	Chr10:114491358-114492535 (-)

Homology

• Gene Tree
  Gm47958
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112684 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112684	Ensembl Gene Model | MGI Sequence Detail	1178	C57BL/6J
transcript	ENSMUST00000219046	Ensembl | MGI Sequence Detail	541	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;