Gm47949 Pseudogene Detail

Summary

• Symbol
  Gm47949
• Name
  predicted gene, 47949

• Feature Type
  pseudogene
• IDs
  MGI:6097219
  NCBI Gene: 108660407
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:127797425-127797798 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097219	pseudogene	Chr10:127797396-127799214 (+)
129S1/SvImJ	ENSMUSG00200013487	pseudogene	Chr10:124150906-124151279 (+)
A/J	ENSMUSG00195017171	pseudogene	Chr10:124614083-124614456 (+)
AKR/J	ENSMUSG00220006676	pseudogene	Chr10:124219303-124219676 (+)
BALB/cJ	ENSMUSG00180011728	pseudogene	Chr10:124605096-124605469 (+)
C3H/HeJ	ENSMUSG00175006148	pseudogene	Chr10:124603858-124604231 (+)
C57BL/6NJ	ENSMUSG00215020559	pseudogene	Chr10:124215769-124216142 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042353	pseudogene	Chr10:123603520-123603893 (+)
CBA/J	ENSMUSG00210009175	pseudogene	Chr10:124428050-124428423 (+)
DBA/2J	ENSMUSG00185027590	pseudogene	Chr10:124583147-124583520 (+)
FVB/NJ	ENSMUSG00205024378	pseudogene	Chr10:123824801-123825174 (+)
JF1/MsJ	ENSUMUG00000046087	pseudogene	Chr10:125884946-125885319 (+)
LP/J	ENSMUSG00230033719	pseudogene	Chr10:126504582-126504955 (+)
NOD/ShiLtJ	ENSMUSG00190016008	pseudogene	Chr10:124646793-124647166 (+)
NZO/HlLtJ	ENSMUSG00225037575	pseudogene	Chr10:130707258-130707631 (+)
PWK/PhJ	ENSLUMG00010010625	pseudogene	Chr10:124343009-124343382 (+)
SPRET/EiJ	ENSMSPG00010037166	pseudogene	Chr10:126310712-126311090 (+)
WSB/EiJ	ENSIUOG00005009357	pseudogene	Chr10:124221134-124221507 (+)

Homology

• Gene Tree
  Gm47949
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112446 (Evidence)
• NCBI Gene
  108660407

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112446	Ensembl Gene Model | MGI Sequence Detail	374	C57BL/6J
transcript	ENSMUST00000218406	Ensembl | MGI Sequence Detail	374	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47949:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96281	Chr10:127797394-127797418 (+)	-19 bp