Gm47944 Gene Detail

Summary

• Symbol
  Gm47944
• Name
  predicted gene, 47944

• Feature Type
  lncRNA gene
• IDs
  MGI:6097210
  NCBI Gene: 115487410
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:78337759-78355742 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  723 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097210	lncRNA gene	Chr10:78337742-78356106 (-)
129S1/SvImJ	ENSMUSG00200050488	lncRNA gene	Chr10:75015890-75034181 (-)
A/J	ENSMUSG00195049664	lncRNA gene	Chr10:75352585-75370879 (-)
AKR/J	ENSMUSG00220048815	lncRNA gene	Chr10:75012249-75030548 (-)
BALB/cJ	ENSMUSG00180053019	lncRNA gene	Chr10:75366957-75385259 (-)
C3H/HeJ	ENSMUSG00175052917	lncRNA gene	Chr10:75238054-75256354 (-)
C57BL/6NJ	ENSMUSG00215053351	lncRNA gene	Chr10:74975824-74994117 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051724	lncRNA gene	Chr10:74852136-74871490 (-)
CBA/J	ENSMUSG00210050221	lncRNA gene	Chr10:75094183-75112477 (-)
DBA/2J	ENSMUSG00185053421	lncRNA gene	Chr10:75436540-75454838 (-)
FVB/NJ	ENSMUSG00205052325	lncRNA gene	Chr10:75128572-75146862 (-)
JF1/MsJ	ENSUMUG00000056034	lncRNA gene	Chr10:76598046-76616883 (-)
LP/J	ENSMUSG00230051239	lncRNA gene	Chr10:77205987-77224273 (-)
NOD/ShiLtJ	ENSMUSG00190052795	lncRNA gene	Chr10:75413945-75432242 (-)
NZO/HlLtJ	ENSMUSG00225048126	lncRNA gene	Chr10:81492888-81511174 (-)
PWK/PhJ	ENSLUMG00010051386	lncRNA gene	Chr10:74979838-74998279 (-)
SPRET/EiJ	ENSMSPG00010048173	lncRNA gene	Chr10:76765142-76802681 (-)
WSB/EiJ	ENSIUOG00005051993	lncRNA gene	Chr10:75013407-75031782 (-)

Homology

• Gene Tree
  Gm47944
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000112224 (Evidence)
• NCBI Gene
  115487410

Representative Sequences			Length	Strain/Species
genomic	115487410	NCBI Gene Model | MGI Sequence Detail	17984	C57BL/6J
transcript	XR_003948916	RefSeq | MGI Sequence Detail	373	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;